RNA id: XM_039782588.1


Basic Information

Item Value
RNA id XM_039782588.1
length 573
RNA type mRNA
GC content 0.42
exon number 5
gene id dynlt1b
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 21177476 ~ 21178916 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTATTCTGAAGAAAAACGACCGGAAGTCTTATTCCAGGGTAACTTTCCCATCGGAGGCTAAGATCTATGGGAGGCAGTAGCAATGGACGAGTATCAGACAGAAGAGGAGACTGCGTTTGTCGTTGAAGAAGTGAGCAAAATCATAAAAGAGTCAGTAGAAGCAGCCATAGGAGGAAATGCCTACCAGCACAGCAGAGTTAACCAGTGGAGCACCAGTGTAGTGGAGCAGTGCCTCAGTCAACTCAGCAAGCTGGGAAAGCCTTTCAAATATATTGTAACGTGTATCATCATGCAGAAAAATGGAGCAGGTCTGCAAACAGCCAGCACATGCTTCTGGGACAACTCAAGTGATGGAAGCTGTGCCGTGAGATGGGAGAACAAGTCCATGTACTGTATCGTCAATGTTTTTGGACTGGCCCTCTGAACCAACTACAATGTACCTGAAGTGTTTGCAATATTTTGGATTTTGTGTATTTTCCAGAACCAGCATGTTATGTTTGGTCATGGTGTCTATATTTGAATACATATTGTTTTTATAGTAAGTGcaattaattaaaacaatacTGTGCTTTA

Function

GO: NA

KEGG:

id description
K10420 DYNLT; dynein light chain Tctex-type 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU252054 lncRNA upstream 4837 21170982 ~ 21172639 (+) False gtf2h5
TU252055 lncRNA upstream 4837 21170982 ~ 21172639 (+) False gtf2h5
TU252056 lncRNA upstream 4837 21170982 ~ 21172639 (+) False gtf2h5
TU252057 lncRNA upstream 4837 21170982 ~ 21172639 (+) True gtf2h5
XR_005636823.1 lncRNA upstream 24292 21151457 ~ 21153184 (+) False LOC120546175
TU252169 lncRNA downstream 169028 21347944 ~ 21348581 (+) True G186210
TU252179 lncRNA downstream 295636 21474552 ~ 21475304 (+) True G186220
TU252261 lncRNA downstream 361672 21540588 ~ 21542781 (+) True G186297
XR_005636932.1 lncRNA downstream 566665 21745581 ~ 21746554 (+) True LOC120546760
XR_005637027.1 lncRNA downstream 654032 21832948 ~ 21833782 (+) True LOC120547080
XM_039782889.1 mRNA upstream 4837 21170948 ~ 21172639 (+) False gtf2h5
XM_039782892.1 mRNA upstream 4837 21170956 ~ 21172639 (+) False gtf2h5
XM_039782888.1 mRNA upstream 4837 21170987 ~ 21172639 (+) False gtf2h5
XM_039782891.1 mRNA upstream 4837 21170999 ~ 21172639 (+) False gtf2h5
XM_039780938.1 mRNA upstream 7115 21163218 ~ 21170361 (+) False serac1
XM_039780900.1 mRNA downstream 45635 21224551 ~ 21226805 (+) True mrps10
XM_039781535.1 mRNA downstream 68747 21247663 ~ 21251189 (+) False ppil6
XM_039781534.1 mRNA downstream 68998 21247914 ~ 21251189 (+) True ppil6
XM_039781537.1 mRNA downstream 73064 21251980 ~ 21266573 (+) False cd164
XM_039781536.1 mRNA downstream 73066 21251982 ~ 21266573 (+) True cd164
TU251678 other upstream 1317271 19856735 ~ 19860205 (+) False kif25
TU251521 other upstream 1529320 19634283 ~ 19648156 (+) False acp1
XR_005636888.1 other upstream 1638168 19429595 ~ 19539308 (+) False nhsl1b
TU252459 other downstream 765827 21944743 ~ 21947000 (+) True erh
TU252499 other downstream 806863 21985779 ~ 22065589 (+) True G186394
XR_005636956.1 other downstream 2399462 23578378 ~ 23589689 (+) True nfkbie
XR_005636955.1 other downstream 2399462 23578378 ~ 23588514 (+) False nfkbie
TU253325 other downstream 2900687 24079603 ~ 24083104 (+) True G186975

Expression Profile