RNA id: TCONS_00072014


Basic Information

Item Value
RNA id TCONS_00072014
length 319
lncRNA type intronic
GC content 0.41
exon number 2
gene id XLOC_036296
representative True

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 14474769 ~ 14482457 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

atctacactgtaaaaaaaatctgtaaaataacagttaaatgactgtatattttaacagattttttccgTATACACGTATTACGGGTGTTTTtccgtttatatacattttcgaattgcattgtgggaaggGGATCGCAGCTCAGACAGCGTTTGATGGACACCGGGACATATTTCTTCCTCTGTTTTTTCCCTGttgtTTGTCCGTATTTTTCTAAACTGCCGTGCGCGGGAAGTGGCGTGACGTCCAATCACCCACTCACTCCCTCTGCACCTGACTGGATTAACGGTAAACGTCAGTTTGTCTGTAAGAGTGTAAAag

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0048731 system development biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0048747 muscle fiber development biological_process
GO:0021546 rhombomere development biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007517 muscle organ development biological_process
GO:0007519 skeletal muscle tissue development biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0030154 cell differentiation biological_process
GO:0048513 animal organ development biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0071599 otic vesicle development biological_process
GO:0035295 tube development biological_process
GO:0009058 biosynthetic process biological_process
GO:0043049 otic placode formation biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:1901861 regulation of muscle tissue development biological_process
GO:0048568 embryonic organ development biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0016202 regulation of striated muscle tissue development biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:0008543 fibroblast growth factor receptor signaling pathway biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0048869 cellular developmental process biological_process
GO:0048634 regulation of muscle organ development biological_process
GO:0071696 ectodermal placode development biological_process
GO:0071697 ectodermal placode morphogenesis biological_process
GO:0048641 regulation of skeletal muscle tissue development biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0003261 cardiac muscle progenitor cell migration to the midline involved in heart field formation biological_process
GO:0003007 heart morphogenesis biological_process
GO:0060788 ectodermal placode formation biological_process
GO:0061061 muscle structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032502 developmental process biological_process
GO:0060537 muscle tissue development biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0060538 skeletal muscle organ development biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0014706 striated muscle tissue development biological_process
GO:0044344 cellular response to fibroblast growth factor stimulus biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0071774 response to fibroblast growth factor biological_process
GO:0009790 embryo development biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0005111 type 2 fibroblast growth factor receptor binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0070851 growth factor receptor binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00072013 lncRNA downstream 3002 14477492 ~ 14478857 (-) False XLOC_036296
TCONS_00070937 lncRNA downstream 29421 14438790 ~ 14452438 (-) True XLOC_036294
TCONS_00070929 lncRNA downstream 302085 14172076 ~ 14179774 (-) False XLOC_036290
TCONS_00070916 lncRNA downstream 437975 14029921 ~ 14043884 (-) False XLOC_036283
TCONS_00070911 lncRNA downstream 509301 13970890 ~ 13972558 (-) True XLOC_036280
TCONS_00072407 lncRNA upstream 8836 14491293 ~ 14495346 (-) True XLOC_036297
TCONS_00070943 lncRNA upstream 95658 14578115 ~ 14578768 (-) True XLOC_036299
TCONS_00072408 lncRNA upstream 300757 14783214 ~ 14790721 (-) True XLOC_036300
TCONS_00072409 lncRNA upstream 595579 15078036 ~ 15081665 (-) True XLOC_036301
TCONS_00072410 lncRNA upstream 768726 15251183 ~ 15251469 (-) True XLOC_036303
TCONS_00070935 mRNA downstream 105969 14244476 ~ 14375890 (-) True XLOC_036293
TCONS_00070934 mRNA downstream 242836 14211746 ~ 14239023 (-) True XLOC_036292
TCONS_00070933 mRNA downstream 272007 14185295 ~ 14209852 (-) True XLOC_036291
TCONS_00070932 mRNA downstream 297436 14180064 ~ 14184423 (-) True XLOC_036290
TCONS_00070931 mRNA downstream 302056 14173805 ~ 14179803 (-) False XLOC_036290
TCONS_00070939 mRNA upstream 21153 14503610 ~ 14554785 (-) True XLOC_036298
TCONS_00070940 mRNA upstream 76921 14559378 ~ 14609284 (-) False XLOC_036299
TCONS_00070942 mRNA upstream 78765 14561222 ~ 14604606 (-) False XLOC_036299
TCONS_00070941 mRNA upstream 78765 14561222 ~ 14604606 (-) False XLOC_036299
TCONS_00070944 mRNA upstream 601929 15084386 ~ 15129573 (-) False XLOC_036302
TCONS_00070936 other downstream 30076 14414353 ~ 14451783 (-) False XLOC_036294
TCONS_00070922 other downstream 387343 14092794 ~ 14094516 (-) True XLOC_036286
TCONS_00070909 other downstream 604014 13877728 ~ 13877845 (-) True XLOC_036279
TCONS_00070885 other downstream 1242767 13238973 ~ 13239092 (-) True XLOC_036261
TCONS_00070876 other downstream 1469032 12998252 ~ 13012827 (-) False XLOC_036256
TCONS_00070951 other upstream 809910 15292367 ~ 15305523 (-) True XLOC_036304
TCONS_00070954 other upstream 1150275 15632732 ~ 15632847 (-) True XLOC_036307
TCONS_00070956 other upstream 1433753 15916210 ~ 15916327 (-) True XLOC_036309
TCONS_00070966 other upstream 2083380 16565837 ~ 16566479 (-) True XLOC_036317
TCONS_00070975 other upstream 2127791 16610248 ~ 16610319 (-) False XLOC_036322

Expression Profile

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