RNA id: XM_039782596.1


Basic Information

Item Value
RNA id XM_039782596.1
length 1646
RNA type mRNA
GC content 0.50
exon number 10
gene id traf3ip2a
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 1374632 ~ 1385722 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CACACCTATTCAGTGAGGAAGAAACAAGAATGTGTACTGTGAATACTACTCCTCAACAGTTTATACTTGATCATGTTCATTCTAATACTTTTCTGTCTGCATACGTACTTTGTTAGATGTGCGTTTCCATTCGGGGTTATAGTTTTCACTTCTTGAGGCAACAGACCCTTTTTCTCAGTGACAGAATGGCCTCTTCTCAAGGACTCTGCCGTCACCAGAGTGTTCCCGTTGAGATGGATGAGAGCATGACATCCTCCAGTCTGGACTTGGCCCTGCCTGCCTCTTGCAAACAGTGTAGTGGACATACAGAGACCAGCAAACGGCTGCAGGACCATGGCTATGAGCAAGCTAGGGGGGCAGCAAACAATGTCAGCCAGTGGAGACTCCCCGAGAGCCTGCACCAGCATGAACCCAGAGCAGCCTGTCATGTGGCCCCGGAACCTCGTTTCATCCCCGCTACACGCTCAGGGGGACAGTTTGCAGATGTTTGGCCTCATGGCCTCAGAGAGCAGGCGCCGCTGTATGAACAGGACTTCACGATTAACCAAAGCGGAGGCTTTGCGAGTCCTTCAAACTGGCCCCAGGATCACTCTGTGGAGGAGGCAGAACACTTGGAGCCCCCTCTCTCACTCAAGTCTGTCGTTAACTACGCCTACTACGTCCCATCACAATACCCTGCAGCAGCACGCATGCCCGGCCCCAACCCAATGCAGGGGAGTCGTCTCAGACAATGTGCGTGCTGCCCTCCAGCAAATCTGCCCCGTCACAATAACAATTATTATCATCATGAGCATGATTACCCAGCGGATCCATGCAAGGAGCCTCAACACCACCAACCGTCACGGACTCCACCCTACAATAGGCTGGAACGTAAAGATGCTCCCCATGGGTCTGTGCCTCAGTATATGGCCCCTCAGAGAGATGTGATGCATGAAGTCAGTGTGAATCGCTCCCTCCAGGCTGGTCCAGGACCAGCCACAAGGGAGTTCAGGAGGACCATCAGTCTGTCTGAGGAGTGTAGGAATGTTTTCATCACATATTCAGTGGATACAGCCAAAGAAATCATTCCTTTTACCAAATTTCTGACTGACCAGGGGTTCAAACCAGCAATTGACATCTTTGATAATCCAATCCGAAGAATGGGCATCAACAAGTGGATGGACAGATATTTGAACGACAAATCAGTGCTCATCATCGTGGTCATCAGCCCCAAGTACAAGGAGGACGTGGAGGGAGACGGAGACGACGATCACGGTCTGCACACCAAGTACATTCACAATCAGATCCAAAATGAGTTCATCCAACAAGGCTGCCTTAACTTCAGACTGGTACCTGTGGTATTTCCTAATGCATCCAAGAGACATGTCCCCAACTGGCTCCAGAGCACCAGGATCTACCACTGGCCCCAGGACACCCAGGACCTGCTGCTGCGCCTGCTCAGGGAAGAGCGCTACATCATCCCCCAACAAGGGGCTGAACTCACCCTCACTGTTCGTCCCCTCTgagaaaaactaaacaaaaggaCTGACACGTCTGGAACATAagcaatttaaaagaaatggatCCTTTTGTCAATGCCTCAACATGCTGTAGGCATGAGGACTGTTAATACTgcagaaaaaagtgttttcagATACAGCTTTGCT

Function

GO: NA

KEGG:

id description
K21124 TRAF3IP2, ACT1; adaptor protein CIKS

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU246096 lncRNA downstream 130157 1244156 ~ 1244475 (-) True G181554
TU246094 lncRNA downstream 130535 1240850 ~ 1244097 (-) True G181553
TU246091 lncRNA downstream 130546 1240850 ~ 1244086 (-) False G181553
XR_005637011.1 lncRNA downstream 186993 1184548 ~ 1187639 (-) True LOC120546998
TU245966 lncRNA downstream 201743 1168079 ~ 1172889 (-) True G181444
TU246125 lncRNA upstream 1633 1387068 ~ 1387315 (-) True G181575
TU246126 lncRNA upstream 2139 1387574 ~ 1387842 (-) True G181576
TU246142 lncRNA upstream 143810 1529245 ~ 1529717 (-) True G181584
TU246111 lncRNA upstream 204846 1590281 ~ 1604825 (-) True G181564
TU246159 lncRNA upstream 296606 1682041 ~ 1682416 (-) True G181597
XM_039782867.1 mRNA downstream 9195 1257395 ~ 1365437 (-) False rev3l
XM_039782866.1 mRNA downstream 9195 1257395 ~ 1365437 (-) True rev3l
XM_039781589.1 mRNA downstream 248312 1038758 ~ 1126320 (-) True cdk19
XM_039782632.1 mRNA upstream 5621 1391056 ~ 1394115 (-) True LOC120547163
XM_039782606.1 mRNA upstream 14064 1399499 ~ 1516023 (-) False fynb
XM_039782603.1 mRNA upstream 14064 1399499 ~ 1516023 (-) False fynb
XM_039782607.1 mRNA upstream 14064 1399499 ~ 1516023 (-) True fynb
XM_039782604.1 mRNA upstream 14064 1399499 ~ 1516023 (-) False fynb
unassigned_transcript_1007 other downstream 520409 854151 ~ 854223 (-) True trnav-aac_19
unassigned_transcript_1005 other downstream 526799 847762 ~ 847833 (-) True trnad-guc_21
unassigned_transcript_1002 other downstream 532607 841954 ~ 842025 (-) True trnad-guc_20
unassigned_transcript_1000 other downstream 537387 837174 ~ 837245 (-) True trnad-guc_19
unassigned_transcript_996 other downstream 546098 828463 ~ 828534 (-) True trnad-guc_18
TU246464 other upstream 1990330 3375765 ~ 3376108 (-) True G181860
TU246538 other upstream 2223412 3608847 ~ 3610329 (-) True G181919
TU246718 other upstream 2506207 3891642 ~ 3893159 (-) False srp9
TU246726 other upstream 2521182 3906617 ~ 3912279 (-) True G182061
TU246722 other upstream 2523112 3908547 ~ 3914015 (-) True G182059

Expression Profile