RNA id: XM_039782604.1


Basic Information

Item Value
RNA id XM_039782604.1
length 3262
RNA type mRNA
GC content 0.52
exon number 13
gene id fynb
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 1399499 ~ 1516023 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGCCCTGCAGAGCAAAGCGCCATCACACGCAGCGGCCACGACGAGCAGCGGGCAGGGCGACACCAGGGTCACCACAGCGGCTCCACCACGCTCTTCATTACCGACACATCCCTCCATCATAACGGTTATGGATTACTCAGCTGCGGATTATTAGAAGCGTTTGAAACTGGGCCTCTGTTTCGGCCGCACGCAAAGCAATGTGGAGGAAATAAAAATCCTGATACGCTGAAAACCAGAGATTATAGATAATGGGCTGTGTGCAATGCAAGGATAAGGAAGCAACCAAACTCACGGACGACCGAGACACCAGCATCTCCCAGGGAGCCGGCTACCGATATGGGGCCGACCCCACACCGCAGCACTACCCCAGCTTCGGGGTCACCGCCATCCCCAACTACAACAACTTCCACGCCCCCGTTGGACAGGGGATGACGGTCTTCGGGGGGGTCAGCACATCCTCTCACACTGGAACCCTGAGGACTCGTGGTGGGACGGGAGTCACCCTCTTTGTGGCACTTTATGACTACGAAGCGCGGACAGAAGACGACCTCAGCTTCCGGAAAGGAGAAAGGTTCCAGATTATCAACAGCACtgaAGGGGACTGGTGGGATGCTCGCTCGCTCACCACTGGTGGCAGTGGCTACATTCCCAGTAATTACGTGGCTCCAGTGGACTCCATCCAGGCTGAGGACTGGTACTTTGGTAAACTGGGCCGTAAGGATGCCGAGAGGCAGCTGCTGTCCACCGGCAACCCTCGAGGAACCTATCTCATCCGGGAGAGTGAAACCACAAAGGGTGCCTTCTCCTTGTCCATACGAGACTGGGACGATGTGAAAGGTGACCATGTCAAGCATTATAAGATCCGCAAGCTGGACAGTGGCGGCTACTACATCACCACCAGGGCTCAGTTTGACACGCTGCAGCAGCTGGTTCAGCACTACTCAGACCGAGCTGCTGGGCTCTGCTGTCGCTTGGTGGTTCCCTGCCACAAAGGGATGCCCCGCCTCGCCGACCTGTCCGTTAAAACCAAAGACGTGTGGGAGATCCCGCGGGAGTCGCTGCAGCTCATCAAGCGTCTTGGGAACGGACAGTTTGGGGAGGTCTGGATGGGAACGTGGAACGGCACCACTAAGGTGGCAGTGAAGACTCTGAAGCCTGGCACCATGTCCCCCGAGTCCTTCCTGGAGGAGGCTCAGATCATGAAGAAACTCCGCCATGACAAGCTGGTGCAGCTCTACGCCGTGGTGTCTGAGGAGCCCATTTACATCGTCACAGAGTACATGGGCAAAGGAAGCCTGCTGGACTTCTTGAAGGATGGAGAAGGACGAGCGTTGAAGTTGCCTAACCTGGTGGACATGGCAGCACAGGTGGCCGCGGGCATGGCCTACATCGAGAGGATGAACTACATCCACAGAGACCTGCGCTCCGCCAACATCCTGGTGGGAGACAACCTGGTGTGCAAGATCGCTGACTTCGGCCTGGCCAGGCTCATCGAAGACAACGAGTACACCGCTCGGCAAGGTGCAAAGTTCCCCATCAAGTGGACCGCCCCCGAGGCTGCGCTGTACGGGAAGTTCACCATCAAGTCGGACGTGTGGTCGTTTGGCATCCTGCTGACGGAGCTGGTCACCAAGGGTCGGGTGCCTTACCCggGCATGAACAACCGCGAGGTGCTGGAGCAGGTGGAGCGAGGCTACAGGATGCCGTGCCCCCAGGACTGCCCCATCTCCATGCACGAGCTCATGCTGCAGTGCTGGAAGAAGGACGCCGAGGAGCGGCCCACCTTCGAGTACCTGCAGGCCTTCTTGGAGGACTACTTCACAGCCACCGAGCCTCAGTACCAGCCCGGGGACAACCTCTAGACCCCCTGTCTCGCCCGGGGGAAGGGGGGCGGCCCGGGGGGCTGGGACAGGACTGGCCCAATCAGCGCTGTTACAAAAACTCTGGAGCCTTCCCAGCCAGGCCTTTATTTTAGGGATCTGTACAGCTTCCTCAGCTCGCCCCGAGCATTTCCAGTTCAACCACCAACCCCTAAAACCCCCCAACCCTCGGACTCCGACGGGCCCCGCCCGGGTCTGCACCAAGTACAGGAAGATGGGGAGGTGGAGGACGCACAGAGTTAactggggttagggttaatgcAATGTATTCAGTGTAAATAAGAAAGgcttgttttagttttaattgttTGCTTTAAGATTTTTTCTCCTGCACAAAATAATGATGATGACCAACATGACGAAGGCAAAAGAAGAGAAGGACGTTGTACGTGTATTATACTGCAGCTCCTGTATTATGTTCTAGAGATTGAATTGGAAGCCtccatatatttttttctaattttccataatgtgtaaagaaaaaaaaaagattattgcTTTTATTCCTGACTTTTTGGTTCATAGTATTGCAGAGGCTTCTTCAGACGAGCATGACGCAGTCCTCCATCGGCCTTCTGTTCTTCTcttgcacccccccccccacccaaaaaAAAGCTTCCTCAGAGCGCCTGTTGCTGTATGGGACAAGGTTCTTTTACAAACGatatacacactcacatttTTGTGAATGAGAGCCGAGCGTGTGAGGATTTTGAACATATCCCTCCTCGCTTATAACTCGGAAACAATTTGGGTGGAAAATATTTCTGTCTTTAAAGAAAGGTTGAGTTAATTTAAGAAGAGAGTACCGTATGTACGACTTATTGGTCGCTCCTCGCCAGGACGGCTTTTGTTTTCCTGGGGGAAGTCAGCGTGGACGGTGGCGTTTTCCTCTCCATCTCTGAACCTGGACCAGCTGAACCTGGACCAGCTCCCCTCCCGagttatttcttcttttatgtTCTACTGACACGGTCATATTTTATCAGTATTTTGAGTCTTTGCTTTGAGTATGTTCTTATTTAACCCTTTTAAAGTGATCCCAGTCGTACTGTATGATCAGGAGGCTCTGGGGCCGATTCACGTTGCAATTCAGAATGGAAAATAAAGATTTTAAGGTTTGAATTCACAAAGGAACCCACTGAATTGAAAATGGATCCAACCCACCCTGATCTGATCTTAATGCAGATGGTTTTCGTGGCCAATGGAAAAGCCTTCATGTGTCAGTTGTACAGCTAAATGTTTTTAAGTGTCGCTAATTTCCCTCCTTTATAtcttttcatttccattttttttttaacacaacttGTTTTGTTAATTCAGTGATTTGGCGTTTGGAATTCAGAAAAGAACAATAAACATTTTACACTCTTTCCAACACA

Function

GO:

id name namespace
GO:0018108 peptidyl-tyrosine phosphorylation biological_process
GO:0045859 regulation of protein kinase activity biological_process
GO:0060027 convergent extension involved in gastrulation biological_process
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0004715 non-membrane spanning protein tyrosine kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU246126 lncRNA downstream 11657 1387574 ~ 1387842 (-) True G181576
TU246125 lncRNA downstream 12184 1387068 ~ 1387315 (-) True G181575
TU246096 lncRNA downstream 155024 1244156 ~ 1244475 (-) True G181554
TU246094 lncRNA downstream 155402 1240850 ~ 1244097 (-) True G181553
TU246091 lncRNA downstream 155413 1240850 ~ 1244086 (-) False G181553
TU246142 lncRNA upstream 13222 1529245 ~ 1529717 (-) True G181584
TU246111 lncRNA upstream 74258 1590281 ~ 1604825 (-) True G181564
TU246159 lncRNA upstream 166018 1682041 ~ 1682416 (-) True G181597
TU246161 lncRNA upstream 167016 1683039 ~ 1683419 (-) True G181599
TU246172 lncRNA upstream 280233 1796256 ~ 1796671 (-) True G181610
XM_039782632.1 mRNA downstream 5384 1391056 ~ 1394115 (-) True LOC120547163
XM_039782599.1 mRNA downstream 13777 1374633 ~ 1385722 (-) False traf3ip2a
XM_039782598.1 mRNA downstream 13820 1374632 ~ 1385679 (-) False traf3ip2a
XM_039782596.1 mRNA downstream 14064 1374632 ~ 1385435 (-) True traf3ip2a
XM_039782866.1 mRNA downstream 34062 1257395 ~ 1365437 (-) True rev3l
XM_039782600.1 mRNA upstream 6254 1522277 ~ 1541225 (-) True si:dkey-119m7.4
XM_039782602.1 mRNA upstream 6255 1522278 ~ 1554183 (-) False si:dkey-119m7.4
XM_039782601.1 mRNA upstream 6255 1522278 ~ 1541225 (-) False si:dkey-119m7.4
XM_039782609.1 mRNA upstream 24070 1540093 ~ 1577463 (-) False tube1
XM_039782610.1 mRNA upstream 24200 1540223 ~ 1577463 (-) False tube1
unassigned_transcript_1007 other downstream 545276 854151 ~ 854223 (-) True trnav-aac_19
unassigned_transcript_1005 other downstream 551666 847762 ~ 847833 (-) True trnad-guc_21
unassigned_transcript_1002 other downstream 557474 841954 ~ 842025 (-) True trnad-guc_20
unassigned_transcript_1000 other downstream 562254 837174 ~ 837245 (-) True trnad-guc_19
unassigned_transcript_996 other downstream 570965 828463 ~ 828534 (-) True trnad-guc_18
TU246464 other upstream 1859742 3375765 ~ 3376108 (-) True G181860
TU246538 other upstream 2092824 3608847 ~ 3610329 (-) True G181919
TU246718 other upstream 2375619 3891642 ~ 3893159 (-) False srp9
TU246726 other upstream 2390594 3906617 ~ 3912279 (-) True G182061
TU246722 other upstream 2392524 3908547 ~ 3914015 (-) True G182059

Expression Profile