RNA id: XM_039782609.1


Basic Information

Item Value
RNA id XM_039782609.1
length 1667
RNA type mRNA
GC content 0.53
exon number 13
gene id tube1
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 1540093 ~ 1577463 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGTCATTAGCACTCGACCAAACACAGGGGAGGCGCGAGATGAAAGAAGCGTTCAAAACTATTTACACAAAGTAGTTTCAATGGAGAGTTATGGACAAATGTTAACATTACGTATGACTTAAATCCGCCTTATACAGGGGTCTGCGTGTGGCTGCCGCCATGACACAGTCAGTTGTTGTCCAAGTTGGTCAGTGTGGGAACCAGGTTGGCTGCAGGTTTTGGGATCTTGCCTTGCGAGAACATGCCCACGTCAATAAAAAAGGATTGTACGATGAGGCCCTCAGTAGCTTTTTCCGAAATGTGGACTCAAGGGAAAGTGATGGGGGAGCCCACGTTGTTGGTGGGAGAATCCAACATCTGAAGGCCAGGGCAGTGCTGGTGGACATGGAGGAGGGTGTGGTCAACGAGATCCTGCAGGGCCCATTGAGAGAAATGTTCGACAGCACTCAGCTCCTCACAGACGTGTCAGGTTCAGGCAACAACTGGGCAGTTGGACACATGACGTATGGCTCAGCCTACAGGGAGCAGATAGTAGATAAGCTGCGGAAGGCAGCAGAACACTGTGATTGTCTGCAGTGCTTCTTTCTCATTCACTCTATGGGAGGAGGTACGGGCTCTGGCCTGGGGACCAGAGTGTTGAGCCTGCTGGAGGAGGAGTTTCCTGAGGTGTGTCGAATTGTCACCTCCATCTATCCGTCTGCGGAGGATGATGTCATCACCTCTCCCTACAACAGCGTTCTGGCCATGAGGGAGCTCACAGAGCACGCCGACTGTGTCCTCCCTGTTGAAAACCAaTCATTGGTCGACATTGTGGACAAGATTAAAAATATGTCTCACAGTGGAAAGCCAGGGTCGGCGATCAAGAGAGACAGCACCATCATCTCTGGGCAGGGCGGGCTCAGTGGGGCAGAGAAGCCCTTTGATGCCATGAATAACATTGTGGCTAACCTGTTGCTCAATATTACCAGcTCAGCTCGTTTTGAGGGCTCTCTCAACATGGATCTGAACGAGATTGCAATGAACCTGGTCCCCTTCCCCCGTCTACACTACCTGGTGCCCAGCCTCACCCCCCTCTACACACTGGCAGATGTCCGTGTCCCCACCAGAAGACTGGATCAAATGTTCAGCGATGCCTTCAGTAAAGACCACCAGCTAATCCGAGCTGACCCGAAGCACAGCCTCTACCTGGCCTGCGCCCTCATGGTCAGGGGCAATGTGCAGGTGTCTGACCTGCGCAGGAACATCGAGAGACTTAAGCCTTTACTTCCCTTTGTTTCGTGGAACCAGGAAGGCTGGAAGACAGGCCTGTGTTCAGTGCCTCCCGTGGGTCACTCCCACGCCCTGTTAGCCCTGGCCAACAACACCTGTGTGAAGCTCACATTCATGGAGCTGAGAGAACGCTTCATCAAGCTCTACAGGAAGAAGGCTCACTTACACCACTACCTGCATGTAGACGGGATGGAGCAGAGCTCCTTTTCAGAGGCCATCAGCTCTCTCAGCTCACTGATCGAAGAGTACCAACATCTAGATGCCACCAAGGGGACACTCATGCCGGACGCACCCAGACTCCGCATTGCCAGATGAAGCTCCTCGAGGCCTGCGGCGGGCGCTCCGGCCTCTTCATATTTCAACTTCAGCCATCTGTCCGCCCTTGATGGCCGGTCTGAG

Function

GO:

id name namespace
GO:0051258 protein polymerization biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005874 microtubule cellular_component
GO:0000242 pericentriolar material cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU246142 lncRNA downstream 10376 1529245 ~ 1529717 (-) True G181584
TU246126 lncRNA downstream 152251 1387574 ~ 1387842 (-) True G181576
TU246125 lncRNA downstream 152778 1387068 ~ 1387315 (-) True G181575
TU246096 lncRNA downstream 295618 1244156 ~ 1244475 (-) True G181554
TU246094 lncRNA downstream 295996 1240850 ~ 1244097 (-) True G181553
TU246111 lncRNA upstream 12818 1590281 ~ 1604825 (-) True G181564
TU246159 lncRNA upstream 104578 1682041 ~ 1682416 (-) True G181597
TU246161 lncRNA upstream 105576 1683039 ~ 1683419 (-) True G181599
TU246172 lncRNA upstream 218793 1796256 ~ 1796671 (-) True G181610
TU246174 lncRNA upstream 226769 1804232 ~ 1804511 (-) True G181612
XM_039782606.1 mRNA downstream 24070 1399499 ~ 1516023 (-) False fynb
XM_039782603.1 mRNA downstream 24070 1399499 ~ 1516023 (-) False fynb
XM_039782607.1 mRNA downstream 24070 1399499 ~ 1516023 (-) True fynb
XM_039782604.1 mRNA downstream 24070 1399499 ~ 1516023 (-) False fynb
XM_039782605.1 mRNA downstream 65788 1399499 ~ 1474305 (-) False fynb
XM_039782072.1 mRNA upstream 27480 1604943 ~ 1660558 (-) True lama4
XM_039782716.1 mRNA upstream 458202 2035665 ~ 2163743 (-) True LOC120547226
XM_039782717.1 mRNA upstream 458202 2035665 ~ 2163689 (-) False LOC120547226
XM_039781100.1 mRNA upstream 745201 2322664 ~ 2325278 (-) True LOC120546265
XM_039781102.1 mRNA upstream 745201 2322664 ~ 2325054 (-) False LOC120546265
unassigned_transcript_1007 other downstream 685870 854151 ~ 854223 (-) True trnav-aac_19
unassigned_transcript_1005 other downstream 692260 847762 ~ 847833 (-) True trnad-guc_21
unassigned_transcript_1002 other downstream 698068 841954 ~ 842025 (-) True trnad-guc_20
unassigned_transcript_1000 other downstream 702848 837174 ~ 837245 (-) True trnad-guc_19
unassigned_transcript_996 other downstream 711559 828463 ~ 828534 (-) True trnad-guc_18
TU246464 other upstream 1798302 3375765 ~ 3376108 (-) True G181860
TU246538 other upstream 2031384 3608847 ~ 3610329 (-) True G181919
TU246718 other upstream 2314179 3891642 ~ 3893159 (-) False srp9
TU246726 other upstream 2329154 3906617 ~ 3912279 (-) True G182061
TU246722 other upstream 2331084 3908547 ~ 3914015 (-) True G182059

Expression Profile