RNA id: XM_039782615.1


Basic Information

Item Value
RNA id XM_039782615.1
length 4096
RNA type mRNA
GC content 0.44
exon number 9
gene id LOC120547149
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 4360202 ~ 4400599 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cccgtctctctctctctgcagagcaGCCGGCGCGCTTGTTCGCCACAGTCCCTCGACTCACACTCTCCTTCCTGCCTCTGACAGGAAGATGGTACCGTGCGCAGAGTGTCCTGCACGCGAACCGAAGGCGTCACTCACCGACTCGCTGCGGGACTTTTAAACTCCATCATGCCGTGTTACGCCAGGTTTCTGTTTTTACTTCTGTGTTTGATCCTGCTCGGGGAGTGCAGGAGACCCAAAAGTAGGAAAAAGCGGTGGTCCGCGCCGGCGGAGAATCACAAGCCGGGCACTCCTCTGTCAAAGAAGGTTGCAGATGGAACCAAATCCCGAAAGATGAAGACCACCCACCTTCTGCGCATAGACGAGCATGACTTTACCATGAGGCCCGCCTTCGCAGGTCCAGCTGTCCCTGTTGGAGTGGATGTGCAGGTGGAGAGCTTGGACAGCATATCAGAGGTGGACATGGACTTCACCATGACCCTGTATCTAAGGCACTACTGGAAGGACGAGAGGCTTGCCTTCCCAAGCTCCACCAACAAGAGCATGACATTTGACGGGCGCCTGGTGAAGAAAATCTGGGTGCCTGATGTGTTCTTTGTCCACTCCAAGAGGTCTTTCATCCATGACACCACCACTGACAACATCATGCTGCGGGTGTTTCCGGACGGTCACGTCCTGTACAGCCTGAGGGTTACAGTAACTGCTGCATGCAACATGGATTTCAGTCGTTTTCCTTTGGACTCGCAGACATGCACGCTGGAGCTGGAGAGCTATGCTTACACAGATGAAGACCTGATGCTGTATTGGAAAAGCGGTGATGAGTCCCTGAGCACTGATGACAGGATTTCTCTGTCTCAGTTCCTCATCCAGAAGTTTCACACTACTTCCAGACTGGCTTTCTACAGCAGCACAGGCTGGTACAACCGTCTGTACATCAACTTCACTCTGCGGCGTCACATCTTCTTTTTCCTGCTGCAGACCTACTTCCCAGCCACTCTGATGGTCATGCTGTCCTGGGTGTCCTTCTGGATCGACCGCAGGGCCGTCCCTGCCAGAGTCTCATTAGGTATAACCACAGTGCTCACCATGTCTACCATCATCACTGGAGTCAACGCCTCCATGCCCAGGGTCTCCTACATCAAAGCTGTGGATATTTACCTCTGGGTcagttttgtctttgtcttcCTGTCTGTGCTCGAATATGCTGCCGTCAACTACCTGACGACAGTGAGGGACGGTAAAGACCGCAAGCTCAGAGAAAAAGCCAGAGAACAGTCCCAGACACTCCCCTGCACCTGTGGCATGTCCCACGCCAGGACCATGATGCTAGACGGAACATACAGCGAGGCGGACGCCAACAGCCTGGCGGGGTACACAAGGGCCTCCATGGCACCTGAGGATGTGTCGGAAAAACAGGAGCGAATGGTAGTGCATCTCTCCCTGGACACCGAGCCCACGGGGACCAAGAAGAAGGGCATCCGCGGCTTCCGGATTATCCAGAACACTCATGCCATTGACACCTATTCTCGCATGATATTCCCTGGCGCCTACATCCTGTTTAACCTGATCTACTGGTGTGTGTACTGCTGATTGTGTGCATTCTAGCCTAAACTGTAGCAGTGTATGAAAAAACTGCGGAATCTTTTAGTTGTCCTTAGAAGAGGGATACAGTTGTTTCCCTTCTGCATGTTCAGGTGGAGCAACAAGTTTGGCAGGATGGTTGAAGAATATCAGAGGCTGCTGGGTGCGAATAGCTCCAACTCTGGCTCACATGTCACCGCTGGACTGAACCACTTATACAGCTTCCCCTCCTTTACATAATTATATCACAAGCTCATATTTACCCACATCATACGCCAACAACTGGTTGGCTGGTTGTACAAATTGTGCTCCCTAGTCTAACTAGTCCAATGGCGGatgtacaaaaataaaaacagactaaTTAACTCTCCAGCTCTGCCTACTATTAATATGCCCAACCCAAAACAGACATAACTGCCTATCAGACATCATGATGTCTTGTAGCcaactttttgtttgtttgcaatttatttcaacaacatTTTTGTCCTAATTTAAGCATTAACATTTTCCTATCTTTCCATTTAAACATGTTTCTCTGCTACACTCATTACTGAagctttagttgtttttttaaaattgtaaaaaaaatatgctgATGTAATCTGCCATTTTTCAAGCCCACTTATTTTCATAATTGTATCTAGGTAGCATATGTAGGAAGATGGTGCCCCTATTCTTAATCCCGCCTACTAAACTCAGATTAAGCAATTGTTTTTCCAGCCAGGGAAAGTAACACCAGATTTATTTGATTGGCTAATGGAATTGGAGAAGCGAGTGATCTGAAACAAGGCTGCAGAGGATCTACAAAGAGGATCTCCACAGCAAGCTGAAAAACACAAACCATGGACATCTTGTCACCTTATCAAGTTGGTTTTAACTAATGTGTTACCAGTTGTGCATTTACACATCCAGTAGACACAGAGCAATATTAGCGTTCATGTGGTTTTTGGCAACACAACTTATGTTGTGTGGttgttgtatgttgtatgtctccatcatcttctgagaaaaatatgtttaatgAAGTGCCATATGTCAGTGTCATGAATATATTGATGGGCAGAGTTTGTAGATAGTCATGAAAGCTTTGCACAACTGAAGAACTTACTGTCTATGTCTAACTGAAGTTGGACTGTTCCTATCTAAACCATAATCAAATGTTTGTGCTACCAGCCCCTGCCTGTACTTCCCTAAATACCACTCTCTTCTCTGAAGCTCTCTATCTTCATGATCAAACTGTCAAAATAACAAGAGTAGATCATTCGGCTGCTATTGCCTCTGTAAACTTTGGATCTGACTGAGTCGCATAGCTAAATGTGTCCAGAGCAGACGGCTTATGAGGCAGTAACTGAGCTAAATACCAGACCTTCTTCCCTTAACGGCGCTCCTACTACAGTGACAACATTTCAATTAAAGTAACAGTAAATGCTGCTGCCCTGTACAGTATTACACATGGACTACCGTTATTAACTACCGGCATTAACAAGACTAAAGCTACAGGACTAACAGGATGTTACTACTGTATAGGTTTTgaagcaacacacacaaaccactgtTGCTGAGTaaagtctttatttatttatgtattcacAGCTTGTTCATTCATTGAGTTTCTTTtatttgatatttatttttagtgTAGCAACAGATCCATGTGCCATTATACCTTAAGTTGGCAAAGATGCACATAACAGGGCTTGTATAGAAACAGCTTGATGCATGCTGCAGACGTGCAATACTGTGTCTTTCTAGATGTGTATTTCTTAGAAGGgacttatcaacatggaaagcTTTACCAGTGATGTAACCAACTTGAACCGCCTTAAGTGAACATTTTTTATGCACAAACATGGTTTAATGGCCATAtgctttttcatttgtttgtttgagtACTATGAGGGACTGCATTGTTATATTGGGGAGTTCTTAGCAGAATCCCATCCAATTCAGCATCAAATCATGTGGGTAAATAGTAAACTAGAAGCTATCCCTATGGCTGGCTGTGCTGTGGTGTGTGACTTCACCCACCCACAAGTGCTGCAGGTTTTTcactgcttccagtctttatgaaaagctaggctaaccacatCTTGGCTTTAGCTCCATACTTAttgcacagacatgagagtggtattgatcttttcATCTAACTTTCTGCAAGAAAGTGAAAAGGCACATCTCAGAAGATGTCAAAGTACTCTTTTAAGTACTCTTTTTAAGTTCTCGACCTGCTTCATAATCTTTTCAGCATCCAATATTGGGCTTTTGCTTTATGGCAGCAATCATTTGCCAAAActcaatgtgatttttttttatttatttacttattttaatgGTGCATATCATTTTGGAATGATACTCTCATAATAGCAAGTCAGATTTCTCAGAGcacaaaaccaaaacaagaaaaacagatCTGTCAGCTTCCAAACCAACATCACTTCAACCTTCATCTTCAGAATGTAATGCTGTCAGAGCAAATTTCATAAATAAAGACTTTCTTTCAAATGCG

Function

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0007165 signal transduction biological_process
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004890 GABA-A receptor activity molecular_function
GO:0005230 extracellular ligand-gated ion channel activity molecular_function

KEGG:

id description
K05190 GABRR; gamma-aminobutyric acid receptor subunit rho

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU246823 lncRNA downstream 76043 4283960 ~ 4284159 (-) True G182137
XR_005637042.1 lncRNA downstream 198092 4157691 ~ 4162110 (-) True LOC120547275
TU246774 lncRNA downstream 256630 4102775 ~ 4103572 (-) True G182105
TU246768 lncRNA downstream 267572 4092423 ~ 4092630 (-) True G182099
TU246684 lncRNA downstream 490503 3867864 ~ 3869699 (-) True G182028
TU246842 lncRNA upstream 3426 4404025 ~ 4404267 (-) True G182156
TU246869 lncRNA upstream 127417 4528016 ~ 4529058 (-) True G182182
XR_005636846.1 lncRNA upstream 145569 4546168 ~ 4554488 (-) True LOC120546262
TU246890 lncRNA upstream 190194 4590793 ~ 4591004 (-) True G182202
TU246972 lncRNA upstream 319318 4719917 ~ 4721769 (-) True G182276
XM_039782653.1 mRNA downstream 163842 4195143 ~ 4196360 (-) True LOC120547177
XM_039782648.1 mRNA downstream 175244 4177573 ~ 4184958 (-) True LOC120547172
XM_039782877.1 mRNA downstream 467027 3891637 ~ 3893175 (-) True srp9
XM_039782383.1 mRNA downstream 469552 3884965 ~ 3890650 (-) True ephx1
XM_039782384.1 mRNA downstream 475589 3875160 ~ 3884613 (-) True LOC120547034
XM_039782345.1 mRNA upstream 7389 4407988 ~ 4475102 (-) True ube2j1
XM_039782655.1 mRNA upstream 80230 4480829 ~ 4485479 (-) True LOC120547180
XM_039782760.1 mRNA upstream 233944 4634543 ~ 4654939 (-) False cfap206
XM_039782758.1 mRNA upstream 233944 4634543 ~ 4654939 (-) True cfap206
XM_039782759.1 mRNA upstream 233944 4634543 ~ 4654590 (-) False cfap206
unassigned_transcript_1027 other downstream 181262 4178869 ~ 4178940 (-) True trnad-guc_28
unassigned_transcript_1024 other downstream 185176 4174955 ~ 4175026 (-) True trnad-guc_27
unassigned_transcript_1022 other downstream 189049 4171082 ~ 4171153 (-) True trnad-guc_26
TU246803 other downstream 194206 4163358 ~ 4165996 (-) False G182121
TU246982 other upstream 345174 4745773 ~ 4803470 (-) False smim8
TU246981 other upstream 398322 4798921 ~ 4803470 (-) False smim8
TU246980 other upstream 400312 4800911 ~ 4803470 (-) True smim8
TU247229 other upstream 1389690 5790289 ~ 5792938 (-) True G182474
TU247260 other upstream 1510713 5911312 ~ 5911909 (-) True G182502

Expression Profile