RNA id: XM_039782616.1


Basic Information

Item Value
RNA id XM_039782616.1
length 2192
RNA type mRNA
GC content 0.49
exon number 3
gene id kcnk3a
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 23307723 ~ 23348356 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTGAGGTCAATTGTGAAGCATGAACCAGAAGTCAAGGAGTGAGAGTTAGAGGAGGAAAAGGTGGACAAGGACGAGGAAGGACAGTTGTCCCTAGGGCTACATTGGTTGACCATGTGCTACAAGGGAGGCTGGGCAGAGAGTTCAGCTACCTGAGCCGCTAGGATGCATCTTTCATCCGTACATTCAGAAATGAGAACCAAGCGGCACAGCCATGAGCCAGCCGAGCTCCCCGTCCTCCAGACCCGCGCTGACATTTTGCCCGTCCCCCTAACACCAGCACCACGCCACCATGAAGAGGCAAAACGTGAGGACCCTCGCCCTCATTATCTGCACCTTCACTTACCTGATTGTCGGCGCCGCGATCTTCGACGTGCTGGAATCCCGGAAGGAGACGACCCAGAGGAGGGAGCTGCAACAGAAGAAAGAGAAGCTGCTCAAGACCTTTAACCTGTCCACGGAGGACTTTGACGAGCTGGAGAATGTGGTGCTGGAGCTCAAGCCGCACAAAGCCGGGATGCAGTGGAAATTCGCCGGCTCGTTTTACTTCGCCATCACTGTGATCACCACCATTGGATATGGCCATGCAGCCCCTAGCACAGATGGAGGGAAGGTGTTCTGCATGCTTTACGCCGTCCTGGGCATCCCGCTCACCTTGGTCATGTTCCAGAGCGTGGGTGAGCGGATCAACACCTTCGTCAGGTACCTGCTCCACCGCCTGAAGAAGTGCCTTGGCATGAGACGGACTGAGGTCTCCATGGTCAACATGGTGATCATCGGCTTCATATCCTGCATGAGCACACTGTGCTTGGGGGCGCTGGCCTTCTCACACTTTGAGGGATGGAGCTTCTTTCATGCTTACTACTACTGCTTCATCACGCTCACCACCATCGGCTTTGGGGACTACGTAGCGCTGCAGAATGAGCACGCTCTGCAGAACAAGCCGGAGTATGTGGTCTTTAGCTTCATCTACATCCTGACGGGCCTGGCTGTGATCGGAGCCTTCCTCAACTTGGCAGTGCTGCGGTTCATGACCATGAACGCCGAGGATGAGAAGAGGGATGCTGAGCAGAGGGCTCTCCTCGCTCATAACGGTCAGGCGGGTGGACACATTCACTGTTCCGTAGACcaggcctcctcctcctccacaccaTCCGTGTGCGGCGGAGGAAGCGCAGTTGAAGGGATTGGGGGTGGGTCGGGGAGCCGAGGTCTACGTAACGTTTATTCCGAAGTGCTCCACTTCCAATCCATGTGCTCTTGCCTTTGGTACAAGAGTAGAGAGAAGCTGCAATACTCCATACCCATGATCATCCCACGTGACCTCTCCACTTCGGACACCTACATGGAGCATGGAGAGGCTTTTTCCAACACACTGCACTCTAACGGCTGCGTGTGCAGCATGCAGCGCCACTCAGGCATCAGCTCAGTTTCCACTGGTCTGCACAGCATTAACACCTACAGAAGACTCAAGAAACGCAGAAGCTCCATCTAAACCTGGAGGACTTCATCCTTTAAAATCGAGTCCTACCTTCTACTGTGGTACTAGATTATCTGAGGACATCAGGGAAGCACAACTCCAGCCCTAAAGACACAGTACTCCAGATGTGTGCTTCTTTCTGGCAAGAGCCTGCTGCTGTCTCCAGACTCATGTATTTAACATCCATTATCTCAGCACAAACCATTTAGGGATAGCATAGTAACTGATGTCACTGAGAAATAATGTTAATGGTTGTTTGAGAAGCATTCATTACACAAACTCTGAGACTGTTGCTGTTAGAAGACAGGGGAAAAACACACGTGTGCAGCTCTCTCTGCACTTCTGAATTCCAATATTAAATGTCATAATATTGAATTCAGTATTTTCTTTGTTCATAAGACAGAATTTCATGTTCTAATATATATAAAGGGACAAAGTACACTGTGAGACATGTTTTCAAGAGGGATTGTATATAATGCCCCGCTATGAAGAaatattttattgaaaaatCCACTTTTTCCAAAAAGACTCTTAATCTTTGCTTGTAAGAATTATACTCACCGCAGTGAAATTGAAAGGTGTATATATTTGGACACTTAACTTGTAGGTGTTGAGGGTTGAGGGAAAGCTTATTTTTACAGTGaaagatttaaatatatatattctcagTGTCTTCTTCTGTGCGTCTGTAACTAAAGTGCAGGTTCAAGCCAAA

Function

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005252 open rectifier potassium channel activity molecular_function

KEGG:

id description
K04914 KCNK3, K2P3.1; potassium channel subfamily K member 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU252986 lncRNA upstream 32263 23268798 ~ 23275460 (+) True G186747
TU252966 lncRNA upstream 110728 23196716 ~ 23196995 (+) False rsph3
TU252963 lncRNA upstream 163433 23143959 ~ 23144290 (+) True G186726
TU252962 lncRNA upstream 164075 23143430 ~ 23143648 (+) True G186725
TU252958 lncRNA upstream 165083 23140507 ~ 23142640 (+) False ppp2r5a
TU253108 lncRNA downstream 72543 23420899 ~ 23432383 (+) True G186842
TU253109 lncRNA downstream 86780 23435136 ~ 23435351 (+) True G186843
TU253107 lncRNA downstream 89884 23438240 ~ 23439520 (+) True G186841
XR_005636851.1 lncRNA downstream 127343 23475699 ~ 23506564 (+) True LOC120546283
TU253175 lncRNA downstream 213920 23562276 ~ 23564295 (+) False tcte1
XM_039781401.1 mRNA upstream 54274 23246999 ~ 23253449 (+) True LOC120546473
XM_039782344.1 mRNA upstream 70551 23198834 ~ 23237172 (+) True ezrb
XM_039780917.1 mRNA upstream 110727 23192638 ~ 23196996 (+) True rsph3
XM_039781933.1 mRNA upstream 120997 23160027 ~ 23186726 (+) True tagapb
XM_039782697.1 mRNA downstream 23528 23371884 ~ 23381214 (+) True slc35f6
XM_039782913.1 mRNA downstream 42850 23391206 ~ 23395336 (+) True hlx1
XM_039782914.1 mRNA downstream 42851 23391207 ~ 23395336 (+) False hlx1
XM_039781132.1 mRNA downstream 174531 23522887 ~ 23539844 (+) False mia3
XM_039781133.1 mRNA downstream 174532 23522888 ~ 23539844 (+) False mia3
TU252499 other upstream 1242134 21985779 ~ 22065589 (+) True G186394
TU252459 other upstream 1360723 21944743 ~ 21947000 (+) True erh
TU251678 other upstream 3447518 19856735 ~ 19860205 (+) False kif25
TU251521 other upstream 3659567 19634283 ~ 19648156 (+) False acp1
XR_005636890.1 other upstream 3768515 19429596 ~ 19539208 (+) False nhsl1b
XR_005636956.1 other downstream 230022 23578378 ~ 23589689 (+) True nfkbie
XR_005636955.1 other downstream 230022 23578378 ~ 23588514 (+) False nfkbie
TU253325 other downstream 731247 24079603 ~ 24083104 (+) True G186975
TU253479 other downstream 1158557 24506913 ~ 24507813 (+) True G187094
TU253601 other downstream 1655663 25004019 ~ 25009407 (+) False lama2

Expression Profile