RNA id: XM_039782651.1


Basic Information

Item Value
RNA id XM_039782651.1
length 2031
RNA type mRNA
GC content 0.52
exon number 3
gene id bmp2b
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 13981265 ~ 13987401 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCAATTCAACCACTACGCTGTGGCGCACAGAGGAGAGGCGACGCGCTCCCAAACTCGGTCCAACAAGGTCCGAGGAGCGACACTTGAGTGCGCTTATCTCTCTTAAAGCCAGGCTCCGCTCAACTTTGTGTCTCTGCGAACTGTTCTCTTTTGAAGATGTTCAACCAACATGCTTTATACTTAGATCGGTCCTGCCTACGCGAACCCGCTTCCTCATAGacttaacatattttttttccccctttctttCCGTGCTGACCAAGACCTAACCCGAATTTTGCAGCTGGTGAGAATATGTGCGAGAGGCGATCGGCGAAGGGCATGGACTGTCTTTGGTCCCTCACGGAGAAGCAGCGTGGATTAAACGCGAATTAATGTGGAATTTATCGGAGCCCCAAGGTGGAACGACGACCGGACACAGCGCTTCCTCGTCAGGGACTGACTGATCATGGTCGCCGTGGTCCGCTCTCTCATGGTACTGCTGCTCGCTCAGGTGTTGCTGGAAGGTGCTGCGGGACTTATCCCCGAGGTCGGCCGGAGGAAATACAGCGAATCCGGGAAGCAGACCCCAGAGCAGTCGGAGAGCTTCTTCAACGAGTTTGAGCTTCGGCTTCTCAATATGTTTGGACTGAGGCGCAGGCCGACCCCGAGCAAGCAAGCCGTGGTGCCGCAGTACATGGTGGACCTTTACCGCATGCACTCAGCAAACGGAGACCACATCTCGAAACGACCCAAGAGCATGGGGAAACACGCAGAGAGAGCCGCCAGCAAGGCCAACACGATTAGAAGCTTTCACCATGAAGAGTCTATGGAGGCCCTGGCCAGGCTGAAAGGCAAAACGACCCAGCAGTTCTACTTCAACCTCACTTCTATCCCTGATGAGGAGCTCATCACCTCTGCAGAGCTACGTGTCTACAGGGATCAGGTGATGGGAGCTGCACCCCCCAACAACAGCTCAAGAAACAGCAGCACCAGTAATAGCGCTCCTGGCTTCCATCGTATCAACATTTACGAGATATTCGGAGTTCCTGCCACTCAAAGTAGGGAACCTCTGGCACGTCTGCTGGACACTCGGCTAGTGCAGGACTCTTTGAGCCGCTGGGAAAGCTTCGACGTCAGCCCTGCTGTATCCCAGTGGACCTCTGGGAAAGGTCACAACCATGGCTTTATGGTGGAGGTGCTTCACCCAGAGGAAGGGGAGATGGATGGGGAGCACGCCCAGAGACGTAGTAGGCACATCAGGGTGAGCCGGTCCCTGCACCAGGACCGGGACTCGTGGCCTCAGGCTCGGCCTCTACTGGTGACGTATGGCCATGACGGCCGTGGGGACTCGGTACTCCACACACGGGAAAAACGTCAGGCAGCACTCCGCAAACAGCGCAGGAAGCAGCAGCACAAGGCCAGCTGCAAGAGACATGCCCTGTACGTGGACTTCAGTGATGTGGGGTGGAACGAGTGGATAGTGGCGCCCCCTGGCTACCACGCCTTTTATTGCCAAGGGGAATGTCCGTTCCCTCTAGCAGACCACCTTAATTCTACCAATCATGCCATTGTGCAGACGCTGGTCAACTCAGTCAACTCGAACATCCCCAGAGCCTGTTGTGTGCCCACTGACCTCAGCCCCATCTCCCTGCTCTACCTGGATGAATACGAGAAGGTGATCCTGAAAAACTACCAGGATATGGTGGTGGAGGGATGTGGCTGCCGGTGAGAAACGAACAGTGGcatggaaagaaagagaaagtgggcaagagagacagaaagagacatcaGAGGTTATTATGGACACCCGGTTTCCCAATGAAGACGTTTATTTAtatgaaagacaaaacagaGCTAttgtggaagaagaagaaaaaaaactatatatgaatatatttatGTCTACGTAAAGTtgggaaaaataaatattttaatcagaGGAAAAATCCTTTACTggttttgaaaatgtatttgtgatGTACATTTCGAAATGGGTGCAATACCACATGAAGTATAATGctcagatttttattttgtatttatttctat

Function

GO:

id name namespace
GO:0001710 mesodermal cell fate commitment biological_process
GO:0060876 semicircular canal formation biological_process
GO:0055015 ventricular cardiac muscle cell development biological_process
GO:0001503 ossification biological_process
GO:0045168 cell-cell signaling involved in cell fate commitment biological_process
GO:0051216 cartilage development biological_process
GO:0048264 determination of ventral identity biological_process
GO:0030509 BMP signaling pathway biological_process
GO:0040007 growth biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0001889 liver development biological_process
GO:0060030 dorsal convergence biological_process
GO:0030903 notochord development biological_process
GO:0042664 negative regulation of endodermal cell fate specification biological_process
GO:0005615 extracellular space cellular_component
GO:0005125 cytokine activity molecular_function
GO:0042803 protein homodimerization activity molecular_function
GO:0046982 protein heterodimerization activity molecular_function
GO:0008083 growth factor activity molecular_function

KEGG:

id description
K21283 BMP2; bone morphogenetic protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249399 lncRNA downstream 138788 13842272 ~ 13842477 (-) True G184162
XR_005636829.1 lncRNA downstream 582690 13339183 ~ 13398575 (-) True LOC120546199
XR_005636830.1 lncRNA downstream 582690 13351138 ~ 13398575 (-) False LOC120546199
TU249249 lncRNA downstream 662335 13318488 ~ 13318930 (-) True G184049
TU249235 lncRNA downstream 723303 13255986 ~ 13257962 (-) False runx2b
TU249445 lncRNA upstream 131621 14119022 ~ 14141806 (-) True G184204
TU249450 lncRNA upstream 200027 14187428 ~ 14231705 (-) True G184208
TU249466 lncRNA upstream 235574 14222975 ~ 14225219 (-) True G184217
XR_005636876.1 lncRNA upstream 251025 14238426 ~ 14243275 (-) True LOC120546499
TU249475 lncRNA upstream 261813 14249214 ~ 14328936 (-) True G184224
XM_039782650.1 mRNA downstream 24127 13946704 ~ 13957138 (-) False fermt1
XM_039782649.1 mRNA downstream 24128 13946704 ~ 13957137 (-) True fermt1
XM_039782334.1 mRNA downstream 36432 13938613 ~ 13944833 (-) True trmt6
XM_039781104.1 mRNA downstream 63141 13911571 ~ 13918124 (-) False LOC120546266
XM_039781103.1 mRNA downstream 63141 13911571 ~ 13918124 (-) True LOC120546266
XM_039782010.1 mRNA upstream 257040 14244441 ~ 14322141 (-) False pak5
XM_039782011.1 mRNA upstream 257040 14244441 ~ 14322141 (-) False pak5
XM_039782008.1 mRNA upstream 257040 14244441 ~ 14290398 (-) False pak5
XM_039782007.1 mRNA upstream 257040 14244441 ~ 14287968 (-) True pak5
XM_039782009.1 mRNA upstream 257040 14244441 ~ 14287966 (-) False pak5
TU249319 other downstream 490137 13481924 ~ 13491128 (-) False mfsd2b
TU249306 other downstream 513200 13458616 ~ 13468065 (-) True fkbp1b
TU249194 other downstream 765441 13206307 ~ 13215824 (-) False hmgn3
TU249578 other upstream 484800 14472201 ~ 14498370 (-) True G184299
TU249614 other upstream 584354 14571755 ~ 14579169 (-) False naa30
TU250064 other upstream 1801513 15788914 ~ 15791558 (-) False si:dkey-177p2.18
XR_005636881.1 other upstream 2503249 16490650 ~ 16517872 (-) False snap91b
XR_005637006.1 other upstream 2842395 16829796 ~ 16835983 (-) False gpatch2

Expression Profile