RNA id: XM_039782704.1


Basic Information

Item Value
RNA id XM_039782704.1
length 1497
RNA type mRNA
GC content 0.43
exon number 5
gene id akirin2
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 24413847 ~ 24417800 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AATATTATAAACTAGTGAACCGTTGTGGGTGCTAGTACTCGGAACTAGTGCAGCAAAATCTGCAATCATCTGATTTTATAGAACATTTACCCTAGATTATTTTGGCCATATTATCTCAATATATATTCAGTAACGTGATCTACATGAGATTTATCAGCAGAAGGCAACGAGAGACGAAAATAGTGCGTATTAGTCTGCTGCCCGGAATTGCATCCGCCGTTTGacctagctaacattagctagcacTAGCAACACAGACGACAGGGCCCAGGTCAGCGACTTTCCCAAATAACAGGGAGTTTTAGCTTTTCCGTTTTAGGTTTTTTAGACAGATTTTAGCGTGATGGCTTGTGGGGCTACTCTTAAAAGGACTCTGGACTTTGATCCACTAATGAACCAGGCTTCACCTAAAAGAAGGAGGTGCGCCCCGATCATGTCTCCAGTCTCATCACCTCAGAAATATTTGCGTATGGAGCCCTCGCCGTTCGGGGAAGTGTCGTCCAGACTCACCACAGaGCAAATTCTACACAACATCAAACAGGAGTACAAGCGGCTGCAGAAACGACGACACCTGGATACCTTCCAGCAGGCAGACAGCTGCTGTCCTCTGGACCTGCAGAATGTTCACAGTGGATCTGCTGTACCAGGTACGTCCTCAGGTGCCTCATCTCCCACCAGAAAAGAGCAGCCTTTATTTTCCCTCAGACAAGTTGGGATGATTTGTGAAAGACTGCTGAAAGAGCGAGAGGACAAAATCCGTGAGGAGTACGATGAGATACTGACAACAAAGCTTGCCgAGCAATATGATGCGTTTGTCAAGTTCACGCATGATCAACTGATGCGAAGGTTTGGAGAGCAGCCTGCCAGCTATGTTTCCTGAGTGTCAGCGTCTGATATTGAGGAATACAATTTGCTACAAGCTACTCCAGGGACTTGTGGGTCTAGTTGGACTTTTCTCCTAGCTGTGTTATATCGCCTCTATGTGGACTCAGTTTGTGGCATCCACGTTTGCTGTGTCTGCCAGAGTTAGGACTTCCTGCTGCCAACTTGTTCAAGGACTCTCTGTGACTCTACCAGTGGCCTCTTAACTGCCGTGTCAATATTTATTTGGCTTTGTTCTGATGCCTTCGTAAAAGGCTGACTGCCACCACACACTTGGCCTTTTTGATTTTACTcagtttttttgtcaaatttagTTATTTCACAGAGAGGATGTTAATTGTGCAGCTTCTCTATATGTACATTTTTGGAAAAGGGATTGAACATTGAAGAGTTGGACGAACCAAGACCGCCTTTAGACTGGACCCCAGGAACAGGCATCTTGgcttttttcagcattgttttacTGGCAATTACATTTGTATacactgtatttttttatttttttgcttgacTTTTGTTCATTGTACCAAAATTTCATGATTCTATTTGCTGTAGGTATAAAGGGGCTTTTGATTCAAGAAAAGCAAACCAATAAAGTGTTTACACAAATGTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU253454 lncRNA upstream 26679 24386956 ~ 24387168 (+) True G187074
TU253387 lncRNA upstream 179096 24211413 ~ 24234751 (+) True G187027
TU253347 lncRNA upstream 225983 24185289 ~ 24187864 (+) False extl3
TU253322 lncRNA upstream 266629 24072763 ~ 24147218 (+) True G186972
TU253548 lncRNA downstream 218925 24636725 ~ 24639484 (+) True G187158
TU253556 lncRNA downstream 238170 24655970 ~ 24656643 (+) True G187165
XR_005636936.1 lncRNA downstream 591713 25009513 ~ 25012350 (+) True LOC120546772
TU253634 lncRNA downstream 591730 25009530 ~ 25012241 (+) False LOC120546772
TU253656 lncRNA downstream 693246 25111046 ~ 25115288 (+) True G187212
XM_039782880.1 mRNA upstream 1517 24408071 ~ 24412330 (+) True cnr1
XM_039782881.1 mRNA upstream 1517 24408071 ~ 24412330 (+) False cnr1
XM_039781349.1 mRNA upstream 37703 24279420 ~ 24376144 (+) True rngtt
XM_039781860.1 mRNA upstream 135358 24259548 ~ 24278489 (+) True LOC120546721
XM_039781858.1 mRNA upstream 161167 24225057 ~ 24252680 (+) True si:dkey-174m14.3
XM_039781804.1 mRNA downstream 1460 24419260 ~ 24436323 (+) True rars2
XM_039781805.1 mRNA downstream 1807 24419607 ~ 24436323 (+) False rars2
XM_039781350.1 mRNA downstream 29108 24446908 ~ 24485599 (+) True LOC120546425
XM_039782057.1 mRNA downstream 80946 24498746 ~ 24506389 (+) True LOC120546832
XM_039782343.1 mRNA downstream 97644 24515444 ~ 24518183 (+) True grcc10
TU253325 other upstream 330743 24079603 ~ 24083104 (+) True G186975
XR_005636956.1 other upstream 824158 23578378 ~ 23589689 (+) True nfkbie
XR_005636955.1 other upstream 825333 23578378 ~ 23588514 (+) False nfkbie
TU252499 other upstream 2348258 21985779 ~ 22065589 (+) True G186394
TU252459 other upstream 2466847 21944743 ~ 21947000 (+) True erh
TU253479 other downstream 89113 24506913 ~ 24507813 (+) True G187094
TU253601 other downstream 586219 25004019 ~ 25009407 (+) False lama2
unassigned_transcript_1083 other downstream 802068 25219868 ~ 25219940 (+) True trnat-ugu_3
TU253978 other downstream 1610260 26028060 ~ 26030400 (+) False nudt14
TU254022 other downstream 1858895 26276695 ~ 26281368 (+) False gareml

Expression Profile