RNA id: XM_039782719.1


Basic Information

Item Value
RNA id XM_039782719.1
length 1090
RNA type mRNA
GC content 0.55
exon number 6
gene id LOC120547228
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 11546186 ~ 11548350 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGCTGCTCCACTCTAACCCTGAGCCTTTTGGATAGAGACGGAGCTTTATTCTTCTGACAGTCGCAAAGACAACATGGACGTCCACAGAGTGTCTAACCACAACCAAATGGATTATAACTTCGACAGCATGGAGCCAAAACACGGGAAAATATTGCATTGTCAAGACGACCGTTTAGACAGCGGCCTGGAGTCCCTGAAGGAGGACGAGCTGGTGAACGTGTTTGAGGATATGAATATGAACTTTAACGAGGAGCCCGCACAGGAATACGAGCCGTGGAGAGCTGCGGTGACTGAGGATGGTGACACGCTTCTCCACTTGGCCATCATTCATGAAGCAAAAGAACATGCCTTTCAGATGATCAAACTTTCTCACAATCACCCCTTCCTCAATGCACAGAACCACCAGAGACAGACTGCCCTCCACCTCGCAGTGATCACGGAGCAGCCCCAGTTAGTGGAGAGGCTTCTGAATGCCGGCAGTGACCCGTGTATGGCCGACGACAGCGGGAACACAGCTCTCCACATCGCCTGCAAGAAGGGCTCCCTCGCCTGCTTCGGCGTCATCACCCAGAACTGCAAACGCCACATCACGTCCATGGTGACCTTCCCCAACTACAGTGGACATAACTGTCTCCACTTGGCGTCCATTAACGGCTACATTTCATTGGTCGAAAGCCTCGTTCGGCTGGGTGCAGACATCAACGCACAGGAACAGTGCAGCGGACGGACGTCGCTCCACCTGGCCGTCGATCTACAGAACCCCGCGCTGGTCCATCACCTGCTCGAACTCGGCGCGGACGTCAACTGCTTCAACTACGGCGGCTTCACGCCGTACCACCTCACGTACGGACGCCAGAACGAAGAGATCCGCCGGCAGCTGTACGAGAGGACGGCACAGGAGCTGAGGGAGCTGCCCGACAGCGAATCAGATGAGAGCGACATGGAGGATCTGGAGTCATCGGAAGATGAGTTGTACGATGACATAAAGTTCGGAAAGTAAACCATCTCTTACCGGTGGTGTGAACGACAGTGAAGCTGCTACTGGGTTGCCCAGCCACGGAcggccaccccccccccctccaacgTGGGA

Function

GO:

id name namespace
GO:0009615 response to virus biological_process

KEGG:

id description
K04734 NFKBIA; NF-kappa-B inhibitor alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU248740 lncRNA downstream 2121 11540514 ~ 11544065 (-) True G183685
TU248735 lncRNA downstream 8735 11536271 ~ 11537451 (-) True G183682
TU248718 lncRNA downstream 45533 11500081 ~ 11500653 (-) True G183665
TU248701 lncRNA downstream 98867 11446975 ~ 11447319 (-) True G183656
TU248683 lncRNA downstream 335393 11189654 ~ 11210793 (-) True G183639
TU248796 lncRNA upstream 37686 11586036 ~ 11590560 (-) True G183720
TU248808 lncRNA upstream 110088 11658438 ~ 11658962 (-) True G183732
TU248810 lncRNA upstream 110704 11659054 ~ 11659573 (-) True G183734
TU248823 lncRNA upstream 150702 11699052 ~ 11699965 (-) True G183747
TU248829 lncRNA upstream 198781 11747131 ~ 11747593 (-) True G183753
XM_039781001.1 mRNA downstream 817661 10724470 ~ 10728525 (-) True glrx5
XM_039780998.1 mRNA downstream 837349 10693839 ~ 10708837 (-) True pla2g7
XM_039780999.1 mRNA downstream 837351 10693839 ~ 10708835 (-) False pla2g7
XM_039782864.1 mRNA downstream 879886 10662117 ~ 10666300 (-) True sf3b6
XM_039781966.1 mRNA downstream 935561 10455244 ~ 10610625 (-) False LOC120546776
XM_039781328.1 mRNA upstream 27123 11575473 ~ 11576057 (-) True LOC120546403
XM_039781838.1 mRNA upstream 71354 11619704 ~ 11634330 (-) True LOC120546716
XM_039782501.1 mRNA upstream 90496 11638846 ~ 11650060 (-) True LOC120547092
XM_039781106.1 mRNA upstream 111644 11659994 ~ 11673089 (-) True kcnk13b
XM_039782028.1 mRNA upstream 345184 11893534 ~ 11918141 (-) True tshr
TU248695 other downstream 171571 11374108 ~ 11374615 (-) True G183650
XR_005636937.1 other downstream 935561 10501920 ~ 10610625 (-) False LOC120546776
TU248535 other downstream 1024776 10520717 ~ 10521410 (-) True G183528
TU248390 other downstream 1445125 10099603 ~ 10101061 (-) False LOC120546281
TU248116 other downstream 2412714 9129573 ~ 9133472 (-) True G183176
unassigned_transcript_1080 other upstream 1034819 12583169 ~ 12583241 (-) True trnat-ugu_2
TU249125 other upstream 1412148 12960498 ~ 13007868 (-) True LOC120547209
TU249198 other upstream 1645727 13194077 ~ 13215824 (-) False hmgn3
TU249194 other upstream 1657957 13206307 ~ 13215824 (-) False hmgn3
TU249195 other upstream 1657957 13206307 ~ 13215824 (-) False hmgn3

Expression Profile