RNA id: XM_039782723.1


Basic Information

Item Value
RNA id XM_039782723.1
length 1546
RNA type mRNA
GC content 0.47
exon number 7
gene id si:dkey-261l7.2
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 13141455 ~ 13145095 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGCCGCTAAAGGTCCGCAGGTTTCTCCGTGGGCTGCGGCGATTGGGCAGACTACCTGCTTGGCACTTCTGACGacaaatttaaataaacaggTGTCAGCAGCATGGGCGAGAGTGtggtttatgtaaataaaacagaagTGAAAGAGTGTCAGTCGGTTTCCGTCTCTCAGACGCAATGTTTGGCAGATAGTTGGAGAAAAGGCTTTGGATTTTAATTACGAGGTGCCAGCTGCGCGGCCATGCCTCAGCTCACGGCCACGGCGGTGCTGCAGCTCGTGCTGCTGCTCTCCGCCGTGCCCGCGCAGTACTTCATCTCCCGCTGGAGCGGCTCCACGGCGGCGCAGCGCTACCACGCGAGCACACGGTTGCTTAGAATTTGGAAAGATTGGAGAACATCTCACCTCAACTTCACTACATGGATAGACTGGGCAGACCAGCAGATGTCCAAAGTCAAGTCTTTGTTTGACTTCGGACAGGAAGTGCCACAAGAGTCGCTTGCCATAGAGGCCATGATTTTTGACAACGACCAGGAATTCTTTGGAGCATCCAAGAAAGTGCGCAGCCCTCGTCCTCCGTACGTGTTTCTGCGGGTTGGAGAGGTGGTGATGGAGAGGAAGGGCCAtatggttggggtggtggtgaGCTGGGACTCTGAGCTGCGAGCCCCTCCACAGTGGGTCGACAGAATGTATTCCAGCTCTGAGgGTCCCAAAGCAGAGAAGACTCCTCATTATAAAGTACTGTTCAACGGGCCTGGACCCTCCTCTGTGTTCGTTGGATACTTGCCTCAGACACAACTGGACCGCATCACTGGGATGAGGCCGGACATTCCCACCTTGGAGAACTACTTCACGCATTTTGACGGGGAGCGGTTCGTCATGCAGCCCTGGCTTAGAGAGCTCTTCCCTGAGGATGGGAATGAGGACGCCTGACtgttcagctgtgtgtgtgtgtgtgtgtgtgtgtgtgcgatcaTACAGGTGACATGAGATATGCAATGTTAAAAACACCAGAGGAAACCTGGCTAtcccttctgtgtgtgttttctgactTTTTCAAAGGTGTCTAATAAGGGACAATTCTCAAGTTCTTTATTTGTCTAAGAAATCTACTGGAATCTATCAATCTTTGTCGAAATGACTGGAAGCCCAAGTGTTGAGCAGATTGAGGATAATTATCAAATCCTTCCTTGCTGGATCTCGATGCGAGGGTGTCTTTTGCGGATTTGGAATAACCCTGGGACTCGCTTATGAAATGttgttacagtatgtacatttttattactttgaagtgtacaaatataaaagtgttttgatttgatgtgccaaaaaaaaatagagctaaaaacatttaatttaatgtttgCTTGATTTTAAGTTAAATGATAACagtaaatgcttgaaatgacaAAATTGCTTTTAAATCtgtcgttttttttctgtttacaaGACTGAGGTTGGCTGAGGTAGAAAAAAATCTTGAAAAACTGCACTTTTATTCAGCCATCATGACTAagcaataaaatacattaaactgTGACAATCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249160 lncRNA downstream 106958 13034252 ~ 13034497 (-) True G183981
TU249128 lncRNA downstream 218648 12841032 ~ 12922807 (-) True G183952
TU249130 lncRNA downstream 232708 12907315 ~ 12908747 (-) True ost4
XR_005636849.1 lncRNA downstream 255680 12884370 ~ 12885775 (-) True LOC120546274
TU249051 lncRNA downstream 514749 12592618 ~ 12626706 (-) True G183908
TU249196 lncRNA upstream 370 13145464 ~ 13215824 (-) True hmgn3
TU249225 lncRNA upstream 104497 13249591 ~ 13250436 (-) True G184026
TU249235 lncRNA upstream 110892 13255986 ~ 13257962 (-) False runx2b
TU249249 lncRNA upstream 173394 13318488 ~ 13318930 (-) True G184049
XR_005636829.1 lncRNA upstream 194089 13339183 ~ 13398575 (-) True LOC120546199
XM_039780918.1 mRNA downstream 126228 12998089 ~ 13015227 (-) True LOC120546166
XM_039782691.1 mRNA downstream 149534 12990575 ~ 12991921 (-) True LOC120547210
XM_039782686.1 mRNA downstream 161456 12978663 ~ 12979999 (-) True LOC120547207
XM_039782687.1 mRNA downstream 161485 12978663 ~ 12979970 (-) False LOC120547207
XM_039782689.1 mRNA downstream 178439 12961650 ~ 12963016 (-) False LOC120547209
XM_039782213.1 mRNA upstream 3557 13148651 ~ 13202337 (-) False LOC120546943
XM_039782211.1 mRNA upstream 3557 13148651 ~ 13202337 (-) True LOC120546943
XM_039782212.1 mRNA upstream 4227 13149321 ~ 13202337 (-) False LOC120546943
XM_039782223.1 mRNA upstream 61236 13206330 ~ 13215900 (-) False hmgn3
XM_039782222.1 mRNA upstream 61236 13206330 ~ 13215885 (-) False hmgn3
TU249125 other downstream 133587 12960498 ~ 13007868 (-) True LOC120547209
unassigned_transcript_1080 other downstream 558214 12583169 ~ 12583241 (-) True trnat-ugu_2
TU248695 other downstream 1766840 11374108 ~ 11374615 (-) True G183650
XR_005636937.1 other downstream 2530830 10501920 ~ 10610625 (-) False LOC120546776
TU249198 other upstream 48983 13194077 ~ 13215824 (-) False hmgn3
TU249194 other upstream 61213 13206307 ~ 13215824 (-) False hmgn3
TU249195 other upstream 61213 13206307 ~ 13215824 (-) False hmgn3
TU249197 other upstream 61213 13206307 ~ 13215824 (-) False hmgn3
TU249306 other upstream 313522 13458616 ~ 13468065 (-) True fkbp1b

Expression Profile