RNA id: XM_039782738.1


Basic Information

Item Value
RNA id XM_039782738.1
length 1730
RNA type mRNA
GC content 0.51
exon number 9
gene id rnf8
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 23548578 ~ 23554266 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGGTTTCGCCCTGTCAATCTTCAGTTTGACACCGTAGCAAAACGTTAGCCATGGAGGAGTAACATATGTTTTTCAGGTCGTATTAGCCTCTGACAGAATGAGATAAGATGGATACTGTAACGACAGATTCGTCTGCAGCTGAGGAAGATGACAGTTCAGACTCAGAGGTTTTATGTTTGATGAGAGTTGGAAGAAATTCAGACTGGCTTCGCTTGTTCGAAAACACTGAGATCACTATAGGACGTGGTGTGGATGTAACTCACCAGTTGTTGTCTCCAAGTTGTCCTCTGATGATCTCCAGACTGCACTGTACATTTAAGCAAAGGGAAGGTGGCAAGTGGACAGTGACCGACAAGAacAGTCTCAACGGTGTGTGGGTGAATGGAAACCGCATACCTGCTGAAGAAGCCCATCAGCTGAGGCTCGGAGACTCCATACAACTCGGTGTTCCTGTAATTGGAACCGAAGTGGAGTTTGACTACATGCTCGTCCAGCGGCCCCTCAAAGACATTAAACTTTACCTGGCAAAGGGACACAGAGAGGGTGCTAAAGCAGCCCATGTTGCCAAGAAGCCCAAAAGGAAGTTGACCGTGGAAGAAGTTGAGCCGTCTACCTCAAAGCCCAAGCTCTACCGCTGCTCCTCTGCAGACAAGTCATTTGCAAAGCCTTGCCCTCTGTCACCAGTGAAACGGCAGCAGAGGCTGAGTCACATCCAACCAGAGGAAACTGGACCCAGCAGACACGTCCAGGAAGTAGACCGGCCCTCAGATGGCTCCAGCAGTCCGTGTGACCTGGACAACTTGCAAATGTACAGCCAGAACATCCTGATGCTGAGGGAGCAGGTGGATGACACCCAGAGGCAGGTAGCCTCGCTGGGGGGAGAGCCCCGGCAGGCTGACCCGCTCAGAGAGGAGCATGTCAGGGAGCTGCGGGGTCAGCTTGAGACGCTCAGAGCCAAGATGCACCGGATGGAGACGTTAGAGAAGTCCTTTAGTGAAACTAAGAGGCAGCTAGAGGCACAGAAAACACAGCAACAAGAGGAgcttttgaagaaacagttggAAGAAGCCTTGCAAGAGCAAAAGAAGGTAATAGACGAACTTGCCCTTTCTCGGGAAGGCTTTGAAGAGATTCTCTTGGCCAAAAACAAAGAACTTGAAGTGACAAAGgaggagaaagaaaaggcGAGGGCCCAAAAAGAGGAAGTAGTAACACAAGTAACTGAAGTTCTGGAGAACGAGCTTCAGTGCATCATCTGCTCCGAGCTCTTCATTGAGGCAGTCATCTTGAACTGCGCTCACAGCTTCTGCAGTCACTGCATCAAGCAGTGGCGCAAAAAGAAAGACGAGTGTCCCATCTGCCGACGGGCCATCCAGTCCCAGACCCGCTGTCTGGCCCTGGACAACTGCATCGACAGCATGGTGGAAAACCTGAGCCTGGACATGAAGTCGAGGCGGCAGACCCTCATTACTGAAAGGAAAGcgGACTCTGCTCAGGTGATGGTGATCCACGATGACgacagcagcaggagcagcaggagcagcgatAGCGACGGCAGCATGGTGTCCATAGATAGTAGCCTGAGCTCTGTGGTCTCTCTGGACACAGACAGTAGCATCCACTTGGACTCCAGTCCGCCCTTCAGTTTCTCTGATGAAAGTGTTGATGAGTTTGATGATTAGCCCTTTTCTTCTGTGGGCTGTAACATGaatctggcttttttttttggt

Function

GO: NA

KEGG:

id description
K10667 RNF8; E3 ubiquitin-protein ligase RNF8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005636851.1 lncRNA upstream 42014 23475699 ~ 23506564 (+) True LOC120546283
TU253107 lncRNA upstream 109058 23438240 ~ 23439520 (+) True G186841
TU253109 lncRNA upstream 113227 23435136 ~ 23435351 (+) True G186843
TU253108 lncRNA upstream 116195 23420899 ~ 23432383 (+) True G186842
TU252986 lncRNA upstream 273118 23268798 ~ 23275460 (+) True G186747
TU253175 lncRNA downstream 8010 23562276 ~ 23564295 (+) False tcte1
TU253166 lncRNA downstream 48370 23602636 ~ 23607535 (+) True G186882
TU253189 lncRNA downstream 93313 23647579 ~ 23649568 (+) True G186901
TU253190 lncRNA downstream 96130 23650396 ~ 23658430 (+) True G186902
TU253196 lncRNA downstream 112671 23666937 ~ 23668127 (+) True G186905
XM_039781132.1 mRNA upstream 8734 23522887 ~ 23539844 (+) False mia3
XM_039781133.1 mRNA upstream 8734 23522888 ~ 23539844 (+) False mia3
XM_039781128.1 mRNA upstream 8734 23522891 ~ 23539844 (+) True mia3
XM_039781131.1 mRNA upstream 8734 23522891 ~ 23539844 (+) False mia3
XM_039781129.1 mRNA upstream 8734 23522891 ~ 23539844 (+) False mia3
XM_039782884.1 mRNA downstream 5232 23559498 ~ 23564429 (+) False tcte1
XM_039782883.1 mRNA downstream 5514 23559780 ~ 23564429 (+) True tcte1
XM_039782077.1 mRNA downstream 24112 23578378 ~ 23588514 (+) False nfkbie
XM_039781485.1 mRNA downstream 35702 23589968 ~ 23597399 (+) True slc35b2
XM_039781487.1 mRNA downstream 56743 23611009 ~ 23624138 (+) True rbm25b
TU252499 other upstream 1482989 21985779 ~ 22065589 (+) True G186394
TU252459 other upstream 1601578 21944743 ~ 21947000 (+) True erh
TU251678 other upstream 3688373 19856735 ~ 19860205 (+) False kif25
TU251521 other upstream 3900422 19634283 ~ 19648156 (+) False acp1
XR_005636890.1 other upstream 4009370 19429596 ~ 19539208 (+) False nhsl1b
XR_005636956.1 other downstream 24112 23578378 ~ 23589689 (+) True nfkbie
XR_005636955.1 other downstream 24112 23578378 ~ 23588514 (+) False nfkbie
TU253325 other downstream 525337 24079603 ~ 24083104 (+) True G186975
TU253479 other downstream 952647 24506913 ~ 24507813 (+) True G187094
TU253601 other downstream 1449753 25004019 ~ 25009407 (+) False lama2

Expression Profile