RNA id: XM_039782791.1


Basic Information

Item Value
RNA id XM_039782791.1
length 982
RNA type mRNA
GC content 0.49
exon number 6
gene id hddc2
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 16375886 ~ 16379169 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGTTGGGCAACTACCTCAGCAAAACACCGTCTTTCTGCATCCGGGTCAGTGGACAGTAATGGCGGCCACCATTGAGACAGCAGTCGGCATGAGCAATATGCTGCAATTCATGAAACTTATCGGACAGCTCAAAAGGGTCCCACGGACGGGCTGGGTGTACAGGAACGTGAAGAAACCAGAGAGTGTATCAGACCACATGTACCGCATGGCCATGATGTCTCTGACCATCACAGACCCCACAGTGGACAAGGACAGATGTATAAAGCTGGCTCTGGTTCACGACATGGCAGAGTGCATTGTGGGAGATATCGCTCCATCAGACAACATCAGTAAAGCAGAGAAACACAGACGAGAAGAGGAGGCGATGAAGCATCTATCAGCTCTACTGCCGGAGGGACTCAAAAAGGAGATTTATGGACTCTGGGAGGAATATGAAACCCAGAGCAGCCCGGAGGCCAGGTTGGTGAAAGAGTTTGACCTCCTGGAGATGATCCTGCAGGCTCATGAGTATGAGGAGCTAGAGGGAACACCGGGAAGACTGCAGGAGTTCTTTGACTCCACCAACGGTCGTTTCCACCACCCAGACGTGCTCCAGCTGCTCAGCTCTCTAAATGAAGAGAGAGGCTGTAAATTGACTAAAACGGATGAAACAAAAAATTCAGGCAACTCGCAGACGACTGGCGAGTCACCTTCCCAGCCATGTAAGACatgactgtaacacacacacgcctccTTAGTGGAGGGACTCTAACACAATATGTTTGTTGGATGATGCAcaaattcaatacaggaaaACAACCCAGTGGAAAACCATCTTCTGCATCTCCCCTCATTTCTGAGCCATTTGCTGCAGTACAACTGTGAACGATGGCACATGGATATCTTCTATGTGCATGCAGCGGTTTTGGCCCATTAAAGGAGAATCCATACTGTCCTGGAAAGTACAGTACCACTATCTATAATAAATACATTCTGACAACTA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0046872 metal ion binding molecular_function
GO:0008081 phosphoric diester hydrolase activity molecular_function

KEGG:

id description
K07023 K07023; putative hydrolases of HD superfamily

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250157 lncRNA downstream 19319 16291390 ~ 16356567 (-) True G184731
TU250156 lncRNA downstream 124017 16250197 ~ 16251869 (-) True G184730
TU250143 lncRNA downstream 210729 16146590 ~ 16165157 (-) False LOC120546332
TU250145 lncRNA downstream 210729 16146590 ~ 16165157 (-) False LOC120546332
TU250105 lncRNA downstream 230717 16125385 ~ 16145169 (-) True LOC120546331
TU250183 lncRNA upstream 276 16379445 ~ 16382479 (-) True G184755
TU250201 lncRNA upstream 54932 16434101 ~ 16434513 (-) True G184762
TU250257 lncRNA upstream 71585 16450754 ~ 16535319 (-) False G184801
TU250292 lncRNA upstream 143565 16522734 ~ 16523699 (-) True G184813
TU250252 lncRNA upstream 154271 16533440 ~ 16535319 (-) True G184801
XM_039782657.1 mRNA downstream 143985 16208259 ~ 16231901 (-) True LOC120547182
XM_039782859.1 mRNA downstream 180780 16189000 ~ 16195106 (-) False LOC120547308
XM_039782858.1 mRNA downstream 180781 16189000 ~ 16195105 (-) True LOC120547308
XM_039781213.1 mRNA downstream 187556 16146656 ~ 16188330 (-) True LOC120546332
XM_039781212.1 mRNA downstream 188031 16146656 ~ 16187855 (-) False LOC120546332
XM_039782799.1 mRNA upstream 22093 16401262 ~ 16409291 (-) False LOC120547270
XM_039782798.1 mRNA upstream 22093 16401262 ~ 16407197 (-) False LOC120547270
XM_039782797.1 mRNA upstream 22093 16401262 ~ 16406714 (-) True LOC120547270
XM_039782796.1 mRNA upstream 30130 16409299 ~ 16415197 (-) True LOC120547269
XM_039782800.1 mRNA upstream 39381 16418550 ~ 16426881 (-) True elovl4b
TU250064 other downstream 584328 15788914 ~ 15791558 (-) False si:dkey-177p2.18
TU249614 other downstream 1796717 14571755 ~ 14579169 (-) False naa30
TU249578 other downstream 1877516 14472201 ~ 14498370 (-) True G184299
TU249319 other downstream 2884758 13481924 ~ 13491128 (-) False mfsd2b
TU249306 other downstream 2907821 13458616 ~ 13468065 (-) True fkbp1b
XR_005636881.1 other upstream 111481 16490650 ~ 16517872 (-) False snap91b
XR_005637006.1 other upstream 450627 16829796 ~ 16835983 (-) False gpatch2
XR_005637059.1 other upstream 1382787 17761956 ~ 17762038 (-) True LOC120547356
XR_005637061.1 other upstream 1383229 17762398 ~ 17762482 (-) True LOC120547359
XR_005637056.1 other upstream 1383564 17762733 ~ 17762808 (-) True LOC120547353

Expression Profile