RNA id: XM_039782795.1


Basic Information

Item Value
RNA id XM_039782795.1
length 2322
RNA type mRNA
GC content 0.47
exon number 2
gene id LOC120547268
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 16387758 ~ 16390630 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGTTAGATCTGCTGAACATGTCCAGACGGATGTTAGGCCGATCCAGCCAGGAGCACTGAAGTCAGATGGGCTTGGCCGAACAATAACACAGTCATTACTTGTTGACCTACTTAACTTTATATccaaaaataaatgcagcttTATATGTTTCTCCATCTGCGCTTCTGCTGAGGTCGCTTCTACGGTATCCCCGTCTTCAGTATGGCAGGCTGTGGAGAAGTGGACTGTTCAGTGAATGCCCTGGCTCCCTCCAAGCTGATAGAGGAAATAGGAGATACTTGTGCTACAGATCCTTTCAATCCCACCACCGCCACCACCACCCCTGAGTGTGCCATCTGCCTGCAGAGCTGCGTCCACCCTGTACGACTCCCATGCTTCCACGTcttctgtttcctgtgtgtgaaAGGTGCCTCCTGGCAGAGCAAGCGCTGTGCTCTCTGCCGACAAGAAGTCCCAGAGGACTTCCTGGAGCGTCCGGTTCTTCTCTTGCCTGAAGAACTGAAAGCAGCAGCTGCAGGGGTGAGCCAGAGTGGAGGGACCCGTGGCGGTTCCCGTGGAGATTATGCATGGTACTATGAGGGGCGCAACGGCTGGTGGCAGTATGATGAAAGGACCAGCCGTGAGCTGGAGGAGGCTTTCGCCAAGGGCAGGAAGAGCACAGAGATGCTGATTGCAGGGTTTCTTTATGTGGCCGACATGGAGAACATGGTGCAATATCGCCGCAATGAGCATGGCCGAAGACGCAAGATAAAGCGGGACATTGTAGATATCCCCAAGAAGGGTGTCGCAGGACTGAGGATAGACCCTGAACCTGCCACCATTCCTACTGTACCAGTTGTCACCCCAGCTGCAACCGAACGTGTCAGCTCAGCTGATGGATCAGACACTGATGGCCAATCACAGTCTTCATTCTTTGGGATAATGGCATCTCTTCCCCCTGTTAGACCTCCAACACTCCTGGGACGCCATCTTACAATCCCCCGCCCTCCCTCCCCCTTAAGCGTGGAGGAGTCTTTCTCCCAGCTCTTAATCAGCCAGCCAGAGGgtgaagaggtggaaggagaagACGAGATACAGACGTATGAGTATGCATCTGGCAGCAGTGAGAGTGAGGAGGAAAGGCAGtgcgagagagggagagcagaaTCGATGCCACAGAGAAGACATAGGCTAAGAGAGAGCCAGCCGGCTAGGATGCCTCCAAGGGGCGGGCCCTCCAGCTCTGCACTCAGTCTCCGCTCACGTAGTCCAGATGGTCAGTGCACTGTGACAGAAGTGTGACTGCTACGGGACAGTGAGATCTGTTCTACAGATGACAGTGCTTGAACTTGTATCAGGTCTgcaaaaaagtttgaaaaccaTTATgcatctttaaaggtcccatgaaatgaaaaatacatttgttaTTTGTATCACTGGGTGATTGCCCCATCAacgatttatttttataacaaaatgtattatttttttttcgaaGATCTCATGCAATGGAATGTAATCTTAGTTTTGTGTGGGATCCAGAAACCGTTTGTTCAAAACCTGCAGGTCTATATGGGTAACTAGCAGTAGCTGCAATAACATGGCTCACAGCTATGTAGTTGGATGttagtttgcaaaaaaaacaccatcgacAGCTCTCTCCACTGTAAACCTATAATAACTTGACACATGGGATGAACTCATGTACATCTTTAATGTCCTCCAcccaatattgtttttcatgcAGAAATGCTGAAACACTTACAACTACAGATGCAAAATTCTGGGAATATTGAAGTTGAAAACTTGACATGGGAATTAACTCTAGTAATATAATTTAAAGCTTACATGAAAGCATGTGACTACATGCTCAGACAGTGCAGTAGTGTGGGCTGCACGTGTGATGGCAGAATGCCCTGTGCATGCAGAGGGTTTCACCGAATTCTTATTTAATGGGATGCTGGCAAATAAAATGATCTGTACATGGTGCAATTTCATGAAATGGGCATACTTTCAATCAAAACTTGCTAAAAAACttactattgcttttttttgtgcatttccCCCAAAAATaagttcatttttaaaatgtatggaTTTTGTATTCAATATATTCCCAAGCTTAACTTCCCTTGGAAAAAGACCTGGACATTTACCGACCCTCTACAACCCCAGTTACAACGTTAAAGCCATTTCAAGGGACCTCAACACATAAATTAAAGCCTTTTGTTGAAGACTCCAAaagcaatatactgtataccagtccctccagaaaaaacgcgattatgcgatcgcataattcaatgcataatcagccagtctgcatatttatgcgggggccgc

Function

GO: NA

KEGG:

id description
K15700 RNF146; E3 ubiquitin-protein ligase RNF146

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250006 lncRNA upstream 5977 16379507 ~ 16381781 (+) False cenpw
TU249994 lncRNA upstream 31210 16291211 ~ 16356548 (+) True G184618
TU249948 lncRNA upstream 340077 16045809 ~ 16047681 (+) True G184584
TU249901 lncRNA upstream 460096 15926071 ~ 15927662 (+) True G184540
TU249897 lncRNA upstream 465960 15914645 ~ 15921798 (+) False LOC120546249
TU250010 lncRNA downstream 10278 16400908 ~ 16404077 (+) True G184628
TU250011 lncRNA downstream 11572 16402202 ~ 16404077 (+) False G184628
TU250017 lncRNA downstream 21046 16411676 ~ 16413501 (+) True G184633
TU250220 lncRNA downstream 102564 16493194 ~ 16494494 (+) False LOC120546561
TU250223 lncRNA downstream 102564 16493194 ~ 16499974 (+) True LOC120546561
XM_039782793.1 mRNA upstream 980 16384271 ~ 16386778 (+) True LOC120547267
XM_039782792.1 mRNA upstream 5902 16379479 ~ 16381856 (+) True cenpw
XM_039781846.1 mRNA upstream 12544 16357572 ~ 16375214 (+) False tpd52l1
XM_039781549.1 mRNA downstream 96384 16487014 ~ 16490639 (+) True LOC120546559
XM_039782672.1 mRNA downstream 127814 16518444 ~ 16523666 (+) True pgm3
XM_039782618.1 mRNA downstream 137359 16527989 ~ 16534031 (+) True ccnc
XM_039782711.1 mRNA downstream 145681 16536311 ~ 16544495 (+) True faxca
XM_039782712.1 mRNA downstream 146185 16536815 ~ 16544495 (+) False faxca
TU249895 other upstream 419635 15914645 ~ 15968123 (+) False LOC120546249
XR_005636865.1 other upstream 671474 15694944 ~ 15716284 (+) False dpf3
XR_005636866.1 other upstream 671474 15694944 ~ 15716284 (+) False dpf3
TU249859 other upstream 724184 15660573 ~ 15663574 (+) True rhov
TU249798 other upstream 1068922 15301925 ~ 15318836 (+) True G184458
TU250012 other downstream 8808 16399438 ~ 16402103 (+) False G184628
XR_005636928.1 other downstream 374915 16765545 ~ 16776601 (+) False si:ch211-57i17.1
TU250355 other downstream 435064 16825694 ~ 16833314 (+) True G184859
TU250543 other downstream 903024 17293654 ~ 17295701 (+) True G184996
TU250558 other downstream 951207 17341837 ~ 17365977 (+) False map7b

Expression Profile