RNA id: XM_039782798.1


Basic Information

Item Value
RNA id XM_039782798.1
length 2416
RNA type mRNA
GC content 0.50
exon number 6
gene id LOC120547270
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 16401262 ~ 16409291 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCGCCTCTACTTTGTTTTTCAGAACGACACTAGCTGTACCATCCTGTTGTTGTTGCCTAAAGTGTTTCCAGTCCATCGATCCTTCCAACCCTACGGTGACCTCTGACAGGAAAGTGAAACAGGAGAAAGGGGAAATTGCCATTTAAAGAGGCCTCTGGGTATTGAACGGCCTGCGTCATGGCAGCCATTGATCTGGAGCGTGGGCTGGAACACAGTGGCCGGGGCTGGGGTAAAGACAAGCCGGAGCTGATGGACAACTTTGACTCAGAGATGCAGGAGTGGGAGGACCAGCTGCAGGACATCCAGAGACAAATTGAAGAGttGTACAATGAAGTTCAGGCCCGCAGAGGAGCAAACGATATCACTACTGACCACCAGAAAAATGGCAATGGTCTTTTTGCGCCCAGCCATCATAGCAAGAATCACCCTGGAGCTATACCTGTGCCACATCACTATAGTAACGGCTGTAACTATAGCCCCAGTGGGTACAGCTACCCTGCGAGTCATCAAAATGGCTACGGTTACTGCCACGCCAACTCAGAGATTGGAGACTTGTTGCAGGATTATTTGGGGCAGGGGAAGCAAATGAGCCGGAAGAACAATGGAGCTCGCCACGTGCGCTTCAGTGACACGATCAAGGTGAGCCCGGGATCAGAGATCAGAAAAAATTCTGGAAATGAAAGGCTTGGTGAAGAGCAGTTTGTGGGCAGTTTTGAGGACACTGAAAACAGGAAGAACCAAGTGTCTCACATGAAGAGCTCCCCCCGCAGAGAGAGTTCCCCcaacaaagaaaacacaggtgCCAAGCCCCCTCTTGGACAAAGGGATGCTCCTGCTGTACAACCACGCTCACAGCTCCCCATAACAACAGCTGAATCTCCTGCTCCAGACAGGAAGTCCTACGGTCCTGGCGTCCTGGGAGATAGGAAGTGCGGCAGCCCCTCTGTTCTCAGGAAGTTTGGAGCCATGCTTCAGGAAAACGAGGGCAAAATGCTCACCGAATCAGGGGTGGTGACCAATCAGGGGCTGGCACAAGAGCCAAAGTGTCCCACCCCGAGCTGTCAGCGCAGAGCTCTGGGAGCCACTGTAGTCTCCGGCAGGGTGCCCATGCGTGTGCCTGCCCAGAAATGCCAATCAGATTCCGGTGTGCTGACAGCAGAGATAGAGCCCGGCCAAGAATGGGGGTTAGTATCAGACTCTGGTAGACAGAACTACAAGGATCACAGAGGAGGCTACAGCGGTTCTAAAGGGGCCCAGCGGAGTCCTCAGCAGTCCCAGAGGAGATCACAGGTGGCAGGGAGCCCAAAGATTAGACCCAGGGCTAACAGTGgggcagacagagagggagcaaGGAAGCCTGCACCCCAACATGTGGAGCCCAAAATGGACTACAGGGTCTCAAGTGCTTCCTCTGGAGCTCAGAAGATCCAGAGGGGTGGGCTAGTGGGACAGGAGTTGCTAGGTTGTGGCAGAGTGAAGGATGAAGGACTTATTGAGCTGCTGGACATGCTGGACATCCAACATGAGTACAGCTCCAGTCCCAGAGCAGGACACACAGCTTACAGACAGGATCCACAGCAGGTAAACCCAGCCAAGTTGTCCCCAGCCAATCCTAAAAAGAGCTTCTCTCGTCCTGCGCGGCCAGCCAATCAGCGACCTCCTTCCAGGTGGGCCGGCCGCACCCCTACTGCCATCATCACCACCCCATCAGGCCCAATGTACAGGCCCCCCAGTCCCCTGACTCGCCCCCCTAGCCCCATGACCAGAACCCCAAGTCCCGTCCTGAAGCACCGGCCTCTCGTTTCCTATTCTCTTCAGACTGAGACAGTCATTATGTGATACCTTTCCATTTCACCAAAGCTTGATCCCTTCCTCCAGGGaaaccctctctctctgtgtaaatAGTAAGGACTTTTCTGTGAAACAAAGTGCTTTAAGAGAGTTAAAGAAATGCTTAATTTCATCTTGATGACATGTTCCAGATAAAACACATCCACGACATTCTCCAGTGTTGCTGTGGCTTTTTGCTTCTTCTGTGATGAAACCTTTACCAACACATCAACATATTGCTTAGCTGCTTTTACCCCCTTATCCtcttttttgtattgaatttcAGGTCTTTTCTGTATAATGAGATTTTGCATGCAGCCCCAGTTTGAGGGTGCATGCTCATGTGTTTAATCCTCATGGTTGCCCTGTTGAATCAAATTCAACCTGGCCACCAGTAGGAATAGATTAAGTCGCGGCTGTGCTCCCAGCAGCAATCTGCTAACTGTCAACAACAGTGTGTTTTAATGTATCATATTGTCAAAGTGATATATTTAAGGTGTTCAAATAACAGTTGTGACAAATGACTATGATATgcctttaatgttttttttttttcttcttggtaATAAATATGACAGTGCTTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250183 lncRNA downstream 18783 16379445 ~ 16382479 (-) True G184755
TU250157 lncRNA downstream 44695 16291390 ~ 16356567 (-) True G184731
TU250156 lncRNA downstream 149393 16250197 ~ 16251869 (-) True G184730
TU250143 lncRNA downstream 236105 16146590 ~ 16165157 (-) False LOC120546332
TU250201 lncRNA upstream 26904 16434101 ~ 16434513 (-) True G184762
TU250257 lncRNA upstream 43557 16450754 ~ 16535319 (-) False G184801
TU250292 lncRNA upstream 115537 16522734 ~ 16523699 (-) True G184813
TU250252 lncRNA upstream 126243 16533440 ~ 16535319 (-) True G184801
XR_005636931.1 lncRNA upstream 189574 16596771 ~ 16605917 (-) True LOC120546751
XM_039782791.1 mRNA downstream 22093 16375886 ~ 16379169 (-) True hddc2
XM_039782657.1 mRNA downstream 169361 16208259 ~ 16231901 (-) True LOC120547182
XM_039782859.1 mRNA downstream 206156 16189000 ~ 16195106 (-) False LOC120547308
XM_039782858.1 mRNA downstream 206157 16189000 ~ 16195105 (-) True LOC120547308
XM_039781212.1 mRNA downstream 213407 16146656 ~ 16187855 (-) False LOC120546332
XM_039782796.1 mRNA upstream 2102 16409299 ~ 16415197 (-) True LOC120547269
XM_039782800.1 mRNA upstream 11353 16418550 ~ 16426881 (-) True elovl4b
XM_039781550.1 mRNA upstream 76099 16483296 ~ 16486939 (-) True LOC120546560
XM_039781540.1 mRNA upstream 83453 16490650 ~ 16517874 (-) False snap91b
XM_039781539.1 mRNA upstream 83453 16490650 ~ 16517874 (-) True snap91b
TU250064 other downstream 609704 15788914 ~ 15791558 (-) False si:dkey-177p2.18
TU249614 other downstream 1822093 14571755 ~ 14579169 (-) False naa30
TU249578 other downstream 1902892 14472201 ~ 14498370 (-) True G184299
TU249319 other downstream 2910134 13481924 ~ 13491128 (-) False mfsd2b
TU249306 other downstream 2933197 13458616 ~ 13468065 (-) True fkbp1b
XR_005636881.1 other upstream 83453 16490650 ~ 16517872 (-) False snap91b
XR_005637006.1 other upstream 422599 16829796 ~ 16835983 (-) False gpatch2
XR_005637059.1 other upstream 1354759 17761956 ~ 17762038 (-) True LOC120547356
XR_005637061.1 other upstream 1355201 17762398 ~ 17762482 (-) True LOC120547359
XR_005637056.1 other upstream 1355536 17762733 ~ 17762808 (-) True LOC120547353

Expression Profile