RNA id: XM_039782801.1


Basic Information

Item Value
RNA id XM_039782801.1
length 2550
RNA type mRNA
GC content 0.44
exon number 14
gene id blk
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 18002070 ~ 18011951 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

agttttaccagaatttttgaTTAAAGTGAACCAATTGAAATTTAATCAGCAGGTGAGGTGATCTTAGTACTGGTTTGTTAGATGATCTGCAGAGGCAAGGAAGGGAATTAtgggacaaaaataaatagacaaACTGCTATCTATTTACGGTAAACTCAAAGCATTTCCCCAGGGGAGGCCCTGGTCTtcactgtgagagagagaaacagaaaagaaaagaggagagagagcaaaagagagagagagactctcagAAACAAAACGAGCCAGTGAGAGTGACACAGTGACGTACAGTTGGTTTTCAATAAGGAAATTGAAGACATATTGCATCTGGAGTACTTTTGAAGACACAAGCCGGGGGACAAGTTCAAGCAGTGGGTATGAACTCACAGACCAGGCCCTACagtgggaggagaggagagtgaaaACAGCTTCAGTAAAGCTCATCTTCTTTATCAGGATGGGCTGCAGTTGCAGTGGCCAGAAACAAGTAAAAGATGACAAGTACAAAGGAAAACACAACTCTCAGGGCTTCAGCTCGTCAAATCACATAGCACGAAGTGGAAACACCGATTTGGATAACGATGATGTTGTGTTTGTGGCACAACATGACTTCAAAGCAGCCAACGACAGAGATCTACCTTTCAAAAAGGGAGACAAACTTCACGTTTTACAGGAAAACGGAGAATGGTGGGTGGCTAAATTGTTGGCGACTGGACAGGAGGGCTTTATACCATGTAACTATGTAGTCAGAGCAGATACACTGGACATTGAAAAATGGTTTTTCAGGGACATGAGTAGGAGAGAGACTGAACGACTGCTTTTAGCCCCCGGAAATAAACCGGGTGCCTTTCTAGTTCGAGAGAGTGAGACCTCTAAAGGGTCCTTCTCACTGTCAGTCAGAGATTGTGTACCAGAACATGGAGATGTGGTAAAACACTACAAGATCCGCTGTCTGGACAAAGGTGGCTACTACATCTCCCCCTCCAACGCGTTCCCATCCCTACAGGAACTGGTCAAATACTACACCCGTACAGCAGACGGGTTGTGTCAGCGGCTGTATGCCCCCTGTAAGGCTAAGGCACCCGAGCAGCAGTGGGCACAAGACGAATGGGAGATTCCCAGAGACACCCTGAAAATGGTGAAGAAGCTGGGGGCCGGGCAGTTTGGAGAAGTGTGGATGGGTTATTATAAGAACACCCAGAAGGTTGCTATTAAGACCCTAAAGGAGGGAACGATGGAGCCTGAGGCCTTCCTGCAAGAGGCCAACCTGATGAAGCAGCTGCAGCATGAACGACTGGTGCGCCTCCATGCTGTGGTCACTATTGAGCCCATTCTTATTGTCACTGAATTCATGATCAATGGGTGTCTTCTGGACTATCTGAAGTCAGACAAAGGGAAAGAGCTAAAGCTACATAAGCTGATAGACATGTCAGCGCAGATAGCTGAAGGCATGGCATACATTGAGAAGAAGAACTACATCCACCGAGATGTGCGTGCAGCCAACATTTTGGTCAGCGACAGCCTGCACTGCAAGATAGCAGATTTTGGCCTGGCCAGGATCATCGAGTCAGAATACACAGCTCAAGAAGGCGCTAAATTTCCCATCAAATGGACGGCTCCAGAGGCCATCAATTATGGCACATTCAGCATCAAATCGGATGTGTGGTCCTTTGGGATCCTCCTCACAGAGATAATCACCTATGGTAGAATACCATACCCAGGGATGACCAACCCAGAGGTGATCAGGTGCCTGGACAAGTTGTACAGGATGCCGTGTCCGGACGGCTGTCCCACGGAACTCTATGACATTATGAGTATGTGCTGGAAGCAGAGGCCTGAGGACCGGCCGACTTTTGAATTTCTGCAAAACACTCTCAACGACTTCTTTATCGCCACAGAGGGACAATATGAGATGCAGCCGTGATTAAAGAAAATGTTTCCTGTTGATAAGCAGAAGACAGCAAGATGTCCTAAAGAGAGAAATGAGACTTGAATGGATAGAGGATGAGGACCAACtagacatctttttttttattttaactgatacaatctttttttttttaaacatttcaaatggACACATTTCTTTTACACCTACCTTCTAAGTGAATGTAAAAGCTAGTCATGGCTTCTTCTGTCTCTAGCAGCTAAGAGTGTCTGAAACATGTTAAAGtcagaaaagaaaggaaatgttttattatatcgACTGTACTTCTGCTTTTGATGGCTTCCATTCTTGCCATGGAGTATAAGGAGACATTATTAGGACTGATATATGATGGTTAAAAGAAGGAATATGgaaatacaaatacagtacatgatGTATTAAAGGCCTTTGGAGCCGAGGAAGTTGGCACAGGTAAACTTACAGATGAAACATTTGCATGGTGCAGATACGAGCAGCCTGAGATTACATGCACAATACTTtgcactttttttaattttattcctTAAGTTGTTCATacataaaaaagaaaggggctTTCTAAAGATAATTAATACTTGGATAcatgtttttgtaaataaaaatatttacattatttagaA

Function

GO:

id name namespace
GO:0018108 peptidyl-tyrosine phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004713 protein tyrosine kinase activity molecular_function

KEGG:

id description
K08890 BLK; B lymphoid tyrosine kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250777 lncRNA upstream 237278 17763969 ~ 17764792 (+) True G185156
TU250773 lncRNA upstream 238334 17760676 ~ 17763736 (+) False G185155
TU250930 lncRNA downstream 45460 18057411 ~ 18059367 (+) True G185254
TU250934 lncRNA downstream 91074 18103025 ~ 18104904 (+) True G185258
TU250935 lncRNA downstream 91074 18103025 ~ 18104517 (+) False G185258
TU250941 lncRNA downstream 126942 18138893 ~ 18140219 (+) False znf513a
TU250952 lncRNA downstream 144019 18155970 ~ 18158108 (+) False LOC120546825
XM_039781950.1 mRNA upstream 8072 17976113 ~ 17993998 (+) False LOC120546768
XM_039781948.1 mRNA upstream 8072 17976119 ~ 17993998 (+) True LOC120546768
XM_039782812.1 mRNA upstream 46472 17952559 ~ 17955598 (+) True sox7
XM_039782197.1 mRNA upstream 52625 17919578 ~ 17949445 (+) False pinx1
XM_039782198.1 mRNA upstream 52625 17919719 ~ 17949445 (+) False pinx1
XM_039782305.1 mRNA downstream 9005 18020956 ~ 18043664 (+) False fndc4a
XM_039782306.1 mRNA downstream 9012 18020963 ~ 18049429 (+) False fndc4a
XM_039782036.1 mRNA downstream 115180 18127131 ~ 18140260 (+) True znf513a
XM_039782037.1 mRNA downstream 115180 18127131 ~ 18140260 (+) False znf513a
XM_039782039.1 mRNA downstream 118738 18130689 ~ 18140260 (+) False znf513a
TU250889 other upstream 84822 17916853 ~ 17917248 (+) True G185237
TU250755 other upstream 315672 17682558 ~ 17686398 (+) True G185145
TU250758 other upstream 329184 17669172 ~ 17672886 (+) False G185145
TU250558 other upstream 636093 17341837 ~ 17365977 (+) False map7b
XR_005637008.1 other downstream 9012 18020963 ~ 18054926 (+) True fndc4a
XR_005637007.1 other downstream 9012 18020963 ~ 18052071 (+) False fndc4a
unassigned_transcript_1081 other downstream 920365 18932316 ~ 18932387 (+) True trnae-cuc_27
TU251420 other downstream 1192203 19204154 ~ 19208096 (+) False LOC120546624
XR_005636888.1 other downstream 1417644 19429595 ~ 19539308 (+) False nhsl1b

Expression Profile