RNA id: XM_039782818.1


Basic Information

Item Value
RNA id XM_039782818.1
length 5272
RNA type mRNA
GC content 0.52
exon number 33
gene id cd109
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 32111590 ~ 32145910 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GACATCCACCTGCTGCCAGTACTGAGTGGAGCCCAGTGGAGTGAGGTTCATTCATGCAAATGGAGCGTCTCCAAGTGTGGGGAATCTTCGGCCTCATCATCCTCACTGGCGCCCAGAGCACCACACACagCCCCGACCCTCAGCCCTCCTACCTGCTGCTGGCCCCCAGAGTCCTCCGCCCCGGAGTCCCAACATCAGTGTCCGTCACCATCCTGACCGCCTCCTCCGTCAATGTGTCTGCCCACATCGCTCACGGCAACCAGACTGTGGCCTCAGACTTCGCTACTGTCCAAGGAGGTTCAACCAAGCTGCTGACTTTACCAGCTATCGGCGAGAGCGAGTCCAGCTACTGGCAGCCGTACCGCCTGGAGGTTAAAGGTCAAATGGGCAGGACCAAGGTGTTCTCCAACTCCACGCAGCTGCACTTTGACCCCAAAGGCCTGACCACCTTCATCCAGACAGACAAACTGAACTACATGCCGGGGCAGGCGGTGAAGATCAGAGCTGTGTCCATTCACCCCGACGGGAAACCCTACGTCAGCCCGGTGGACATCGTCATCAGAGATCCGAGGGGGAACATGCTCAGACAGTGGCTGTCTCTGGACAGCGTCCTCGGGGTCGTGTCCCAAGAGTACCAACTGTCTGAAAACCCGCCTCTGGGGGAATGGACCATTATTACTACAGTCGCTGGTTTTTCAAGCGAGAAGCATTTCAATGTGGATCATTATGTTCTGCCAAAGTTTGAAGTTGTGATTAACGCTCCGGATGTCATTTATAAAGAGGACACTCTGTGGGGCTCCGTCACAGCAAAGTACATGTACGGAAAGCCTGTTCAGGGACACATGAATATAACGATCCTCCACAACTTTCATGGTATGGAAGAGGCTTATGATGAAGATAGAGAGATCGACGGCAGCACAGACTTCATGTTTGACATTCCCATCTACTACTACCCCATGAGCAAACGAGCTTTCGAGATGTTCTCCTATGACGGCTACATGAACGATCAGTATCTAATGATCAATGTTAATGTGACTGAGCATCTCACAGGTCTCACATATAGCAGTACGGCAAAGGTGTTTTTGGCAAGGTACCGATATAAAGTTTCTTTTGATGGCTATACCGAAATATTAAGGCCCTCTCTGAACTTCCCTGCCAGGCTAAAAATATCTACATACAACAATAAGCCACTGTCACCAGAGGATCAACAGAAGACTGTTAAAGTGTCAGTGATGCAACAAAAGGAAAGTCCGTGGAGTATGCAAATGGCCGAGGAGGGAATGGTGCCTCGTCCATTAAATATGTCGGGCCCTTCAAATGTTGTGCGTCCAGAGGAGATGCTCCCCAAAGAAATGGAATTTCCTGTCCCTGCAGATGGAGTCATACCCCTCAACATTCAGCTCATGAATGAAATAGAAACACTCACGATTGATgcaTATTTTGAGGACAGTCATAACACTCTACAACTCTATCGAAGCTACACATCCCCCAGTGACTCCTACCTGCAGATTCAGAAACCCTCCGGGCCTTTATTGGTTGGTTCACCCCTCCTGCTGCACATTGACAGgaattttaaaatgactgaTATTCACTATATAGTGAAGTCCAGAGGGCAGGTAGTTTCTGCTGGGAAAAGCTCTGGTGTTGTAACTCTGGTCCCAGAAATCACCTGGGCTCCTCTGGCCTGCGTCATTGTCTACTGTGTGTGTCCCAACGGTGAGATTGTCAACGATGTCATGCAGATACCCATCACCCAAACTTTGAAAAACCAGGTGTCTCTGAGCTGGAGCGACACTACGCGGCGGCCAGCTGACGAGGTCACACTGAGGGTCGCGGTGTCGGAGCCCGCCTCTCTGGTCGGCATCCTGGTGGTCGACAAGGCGACCAAGTGGAAGGGATCACACAATGACATAACCAAGGAGACGGTGCTGAAAGAGATGATGGAGTATGGCGTTTCCACGGCCGACGCCTACTCTGACATGATGACAATGGGAGATCCGTACTCCATCTTCGAGACATGCGACCTTGTGGTGTTGACTGATGCCAGTTTACACATGATGAGGACTAAATTCCCAGGGGAGGGAATTCATCAATTGTTCGAGACAGACAGTTCACAAATGGAGCAACAACAGGAGCCACGAGAGCGCTGGAACTTTCCAGAGACCTGGATATGGATGGACACCAACACAAGTAATTCAAAGTTATTAGAGATACCTGTGATTGTACCAGACAGCATCACAACCTGGACAGCCACCGCCTTCGTCATATCTGAGAACCTGGGCCTGGGCGTTGTAGAGATGCCGGCAGAGCTCACAGTGTTCCAGGATTTCTTCCTGTCCTTGAACCTGCCGGCCTACATCATCCGAGGAGaggagctgctgctggagaTCCTTCTGTTCAACTACCTCCCTCAGGACCTGGAGGTCACGGTGATTGTTGCCGAGAGCGACGCCTTTGAGTTTGTGGTCCCGGACGTTGAGGGGCTGTCCATGGCCAGTGTTCGCCATGTGTCTGTGGGGAATCAGAGCGGAGCATCCGTCCTCGTTCCCATCAAGCCTCTAGTCCTCGGGGAGATCCCCGTCTCTGTGAACGCCGTATCGGCCGCGGCGTCCGACTTGGTCCGCAGGACGGTGCTCGTCAAGGCCGAAGGACTCGAGCAGTCGTTCTCCGCCTCGCTGCTGTTTGAGCATCCATCGGGGTTTTCCAGTCAAAACGTCATGTTCACCTTCCCGGCAGATGTCGTGGAGGGCAGCGAGAGAGCTTCGGTGACGGTTGTTGGTGACATCCTGGGCCCGTCCATCAGCGGCCTGGGCTCTCTGATCCAGATGCCCTACGGCTGCGGAGAGCAGAACATGATCAACTTTGCACCAAACATCTACGTTCTGCAGTATCTGAGCGCTGTGGGACAGACGGACACAGAAACCACAGAAAGAGCCACAGGCTACATGATGAACGGTTATGAGCGAGAGCTGTCCTTTAAGAGAGCAGACGGCTCCTTCAGTGCCTTCGGAGACCAGGACTCATCTGGAAGCACCTGGCTCTCTGCGTTCGTGCTGAGGTGTTTCCTGCAGGCGCGGCCGTTCATCAGCATCGACGACCAAGTGCTGCAGGGAGCGGCGGCCTGGTTAGGAGACCGGCAGGAGGCTGACGGGAGATACATGGAGCCCGGTCGCGTCATCCACACCGAGCTCCAGGGAGGCCTGGATGGCCCCGTCTCCCTCACAGCCTACGTCCTCATCGCCCTGCTGGAAGACAGCAACATCAGGGTTAAGTACGGCAGCCAGGTGTCTGCAGCCCTGATGTTCCTGGAGACCCGTCTGGCTCTCGGGGTGTCCAGTAATTACAGCCTCAGCATACTCACCTATGCTCTGGCTCTGTCCGGCAGCTCCAATGCCGACGCCGCACTCagccagctgattggacgagCTGAGATGAGAGATGGCGTGCCGATGTGGTCTTCCCCAGACAGCAGCCTGTCGTCGTCGTGGCAGCCGCGCTCCGCAGACATTGAGATGGTGTCGTACCTGCTGCTCGCCCAACACAAACTGGGGCAAGTCACGCAGGCTCTCAGCCTCATGAAGTGGCTCAGCCAACAGCGGAACCCCAACGGAGGATTCGGGAGCACTCAGGACACGGTCGTGGCTCTGCAGGCCTTGTCCACGTTCGCAGCTCGCGGCGGCTCTCACGACTTTAACCTCTCCGTCAGAGTGAACACCGACCCTTTGACCACCGTCGCCTTCTTCCACATCGACCAGGAGAACTACCTGCTGCACCAGAGCCAGCGGATTGAACCAGAGGAGGAGCTGAACCTGAGGGTGTCTGCAAAAGGTCGTGGACTCGCCCTGTTTCAGCTGAACGTGTTTTACAACATCAGGAACGAGGGGCTGGCGAGGAGGCGGCGAGACGCCGGCGAGCACGAGGCCTTTGATCTGGACGTCGAGCTGTTTGACACGGAGATGGTCTCGCATCTGTACATCTGCAGCCGTCTGTCAGAGGATCAGGGTCTGGTGGCGACGGGCATGGCCATCATGGAGGTGGGTCTGCTGAGCGGCTTCAGCCTGCTGCAGGACGGCGTACCCATCGACCACGTCATCAAGAAAGTGGAGACGGTGCCGGGGAAAGTCATCCTGTACCTGGACTCTGTGACGACGGAGGAGATGTGTGTGCGGATTCCGCTGGTCGTGGAGTTTAAAGTCGCCAAAGTCCAGGGGGCCAGTGTTGTCATCTATGATTATTATGAACCAAGACGGAGGACAGTGAGGACGTACACGTCGGAGTGGAGGAGCGAGATGTCCGCCTGCTCCTTCTGCGGCGGCGACTGCAGTCAGTGCGGACACGACGACTATTCTGACACCAGCGTGATGTCACACAGCAGCCAGAACGTCCCGATGCGGGGGTTAACCCCggctctgctcctcctcctcctcatcatcaccatcatgtAAATAAGTCCAACAGATGTTCAGCATTTGCAGATGTATAATGATTACATACATTATGtgacatgtttgtttttcaatGCATTTGCTTTAGTCGTATATCATCGTGTTATAACTTGAATTATTCACTTTGCATTTGAACACAGCCGCTAAATACTGCTGAgctcaatgtttttgtctcatGGGAACATTTATTATtggtacacacatgcatatccAGGGAGATCTACATGAATACTCTTTTATCATATGTGACCTTCTGATTTCACTGTTTATTCTGCCTGCCACCTTGCAttcattaaaatatgatttatgtTTAAGTGCACAACGAAGTTATTGGACACTTTAAGTACATACAgtgtatatttctgttaaaTTTGTATATCCAAGATTTTCTGTTAAGTTTCTTCTTTCTGTTACATCTTTTTGTGTCTTCTGCCAcgttttaggaaaaaaacaagatgaaTAGAAGTTTTGCTGTAACCCAATGCAACAACATTCAGAAATGCACTGTGTTGGCCAATCAAATACTGTACGTGCAAGCACACACTCCTGGTAGAGTAGTCTGCAGTGTGAAAGGGGGAAATCCAGAGTTGTAAAATCCTGTCTTGTAGTTTTAGAAACTCTTCGTCGGAGTTTAGGTGTCTGTTAAGCCTTCAAACTGAAGATATGTATGATGTGTATTACTATCCCTGtatagatgtgatatgatttccaTCTTTGTTGTTCGGCCTGGCTCAGGATAAACCCAAACACATACAATGAATGCTGtagaactttattttattatccagtttgacagtcagtcataactGAAAAAGAACATCAATAAA

Function

GO: NA

KEGG:

id description
K06530 CD109; CD109 antigen

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU255867 lncRNA upstream 125504 31985312 ~ 31986086 (+) True G188819
TU255866 lncRNA upstream 142649 31968623 ~ 31968941 (+) True G188818
TU255863 lncRNA upstream 158938 31947198 ~ 31952652 (+) True G188816
TU255856 lncRNA upstream 184457 31918999 ~ 31927133 (+) True G188809
TU255825 lncRNA upstream 200291 31839806 ~ 31911299 (+) True G188785
TU256062 lncRNA downstream 56352 32202262 ~ 32202553 (+) True G188971
XR_005637045.1 lncRNA downstream 82776 32228686 ~ 32229327 (+) True LOC120547295
TU256071 lncRNA downstream 92573 32238483 ~ 32238824 (+) True G188980
TU256084 lncRNA downstream 170390 32316300 ~ 32319175 (+) True G188987
TU256125 lncRNA downstream 296373 32442283 ~ 32442619 (+) True G189011
XM_039782828.1 mRNA upstream 5930 32093951 ~ 32105660 (+) True crnkl1
XM_039782187.1 mRNA upstream 226788 31881465 ~ 31884802 (+) True nkx2.4b
XM_039782188.1 mRNA upstream 226788 31881465 ~ 31884802 (+) False nkx2.4b
XM_039782524.1 mRNA upstream 242294 31866894 ~ 31869296 (+) True nkx2.2b
XM_039782525.1 mRNA upstream 242294 31866894 ~ 31869296 (+) False nkx2.2b
XM_039782844.1 mRNA downstream 389825 32535735 ~ 32569277 (+) True senp6a
XM_039782846.1 mRNA downstream 389825 32535735 ~ 32569277 (+) False senp6a
XM_039781369.1 mRNA downstream 430546 32576456 ~ 32767003 (+) True myo6a
XM_039780909.1 mRNA downstream 820287 32966197 ~ 33041169 (+) False mei4
XM_039780908.1 mRNA downstream 830044 32975954 ~ 33041169 (+) True mei4
TU255816 other upstream 330552 31777029 ~ 31781038 (+) False LOC120546196
TU255785 other upstream 501489 31606054 ~ 31610101 (+) False LOC120546816
XR_005637055.1 other upstream 607362 31504009 ~ 31504228 (+) True LOC120547352
XR_005637054.1 other upstream 610536 31500835 ~ 31501054 (+) True LOC120547351
XR_005637053.1 other upstream 612262 31499109 ~ 31499328 (+) True LOC120547350
TU256147 other downstream 430568 32576478 ~ 32622264 (+) False myo6a
TU256417 other downstream 1182193 33328103 ~ 33331713 (+) False pex7
TU256470 other downstream 1308086 33453996 ~ 33458768 (+) True G189269
TU256525 other downstream 1495710 33641620 ~ 33685556 (+) True G189309
XR_005637066.1 other downstream 1617555 33763465 ~ 33763626 (+) True LOC120547364

Expression Profile