RNA id: XM_039782828.1


Basic Information

Item Value
RNA id XM_039782828.1
length 2538
RNA type mRNA
GC content 0.54
exon number 14
gene id crnkl1
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 32093951 ~ 32105660 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACTGTCATGGTGGCTGGCGCTTAATGTTGCCAAAACGTTTCGGTACCTGGTTTTAGTTTAGTTGTTTTCTAAACGTTTCAAGTGCGTTTGGTAGCTTAATTGTTCAGTGTTTTTGGGTTAAACCTGCCATTAGCCATGGCTTCCACCGCGGCGGGTAAACAGCGGATACCGAAGGTGGCGAAGGTGAAGAATAAAGCTCCCGCAGAGGTTCAGATCACTGCTGAGCAGCTGCTGAGGGAAGCCAAAGAGCGGGAGCTCGAACTTCTGCCGCCGCCACCCAAACAGAAGATCACCGATGAGGAGGAGCTGAACGATTACAAACTCAGGAAGAGGAAGGGGTTTGAGGACAACATCAGAAAGAATCGCACTGTCATCAGTAACTGGATCAAATACGCACAATGGGAGGAAAGCCTGAAGGAGATCCAGAGGGCTCGTTCCATTTACGAGCGAGCGCTGGACGTCGACCACCGCAACATCACTCTGTGGCTGAAGTATGCCGAGATGGAGATGAAGAGCCGGCAGGTGAACCACGCCCGCAACATCTGGGACAGAGCCATCACCATCCTCCCGCGTGTCAACCAGTTCTGGTACAAGTACACCTACATGGAGGAGATGCTGGGGAACGTCGCCGGCTGCAGGCAGGCGTTCGAGCGCTGGATGGAGTGGGAGCCCGATGAGCAGGCCTGGCACTCGTACATCAACTTTGAGCTGCGCTACAAGGAAGTGGACAAAGCTCGCAGCATTTATGAGCGATTCGTCATGGTTCATCCCGAGGTGAAGAACTGGATCAAGTACGCTCGTTTTGAAGAGAGGCACGGCTACATCGCCCACAGCCGGAAGGTGTACGAGAGGGCGGTGGAGTTCTTCGGAGAGGTTCATGTGGACGAAAACCTCTTTGTGGCCTTCGCCAAGTTCGAGGAGACACAGAAAGAGTTTGAACGCGTCCGGGTGATCTATAAGTACGCTCTGGACAGAATCCCCAAACACCAGGCGCAGGAGCTCTTCAAGTTCTACACCATGTTCGAGAAGAAGTTCGGAGACCGCAGGGGAATCGAGGACGTCATCGTCAGCAAACGAAGGTTCCAGTATGAGGAGGAAGTCAAGGCCAACCCACACAACTACGACGCGTGGTTCGATTACCTGCGCCTGGTGGAGAACGACGCCGACCCCGACACGGTGCGAGATGTTTACGAGAGGGCCATCGCCAACATCCCCCCCATCCAGGAGAAGAGACACTGGAAGCGATACATCTACCTGTGGATCAACTACGCGCTGTACGAAGAGCTGGAGGTCAAGgATCCTGAGAAAACGAGGCAGGTGTACCAGGCCTCTCTGGACCTCATCCCACATAAAAAGttcacgttcgctaAGATCTGGCTGCTCTACGCTCAGTTTGAGATCCGGCAGAAGAACCTGCAGGGAGCCCGAAAGGTCATGGGTACAGCGATCGGCAAATGCCCGAAGAACAAACTGCTGAAGGGCTACATCGAGCTGGAGCTGCAGCTGCGCGAGTTTGACCGCTGCAGGAAGCTGTACGAGAAGTACCTGGAGTTCAGCCCGGAGAACTGCACCACCTGGATCAAGTTCTCCGAGCTGGAGACCATCCTGGGAGACGTCGAGAGAGCCCGTGCCATCTTCGAACTCGCCATCGGACAGCCGCGGCTGGACATGCCTGAGGTGCTGTGGAAGTCCTACATTGACTTTGAGATTGAGCAGGAGGAGTTTGGAAACACCCGGAACCTTTACAAAAGGCTGCTGCAGCGCACCCAGCACGTCAAGGTTTGGATCAGCTACGCCAAGTTCGAGCTGTCGATCGACAGCGACGAGCGGCTGCAGAAGTGCCGGCAGATCTACGAGGAGGCCAACAAGGGCATGAGGAACTGCGAGGAGAAGGAGGAGCGGCTGATGCTGCTCGAGTCCTGGAGGGACTTTGAGAGGGAGTTTGGCTCCgacagcaccatggacagagtCCGGAAGCTGCTGCCGGAGAaggtgaagaagaggaggaagctgACGGCCGAGGACGGGTCGGACGCAGGCTGGGAGGAGTACTACGACTACATCTTCCCAGAGGACGCGGCCAACCAGCCCAACCTCAAGCTGCTGGCCATGGCAAAGATGTGGAAGAGGCAGCAGATTCAGGAGGACGAAAGTCCAGAAAAGTCTCCCGAAGCGGCCGAAGAGATGGCATCGCCGCCCTCGGGCGAGCCCGCAGCCGCTCCCGAGAACCTGCCGGAAAACGACTCGGACAGAAACACGGCGACGGAAACAGAACAGGACAAGACGTGCGACGATCGAGACGACAGTGGCAGCAGCAGCGAGAGTGAcagtaatgatgatgatgagaagaAAAAGGGGGAAGAgaatggaaagaaagaggagggtGGAGATGAAGATAAAGAGTAGATTCATGTTTCCCCGCTCAGACGTTCATCttggattctttttttctactgaatgttttctttaacaaaACCAGCTCACGAGTAGTCTTTATTGTATGACCATGTTTTCTGCATTATACAAACGTCAATTCAA

Function

GO:

id name namespace
GO:0006396 RNA processing biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K12869 CRN, CRNKL1, CLF1, SYF3; crooked neck

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU255867 lncRNA upstream 107865 31985312 ~ 31986086 (+) True G188819
TU255866 lncRNA upstream 125010 31968623 ~ 31968941 (+) True G188818
TU255863 lncRNA upstream 141299 31947198 ~ 31952652 (+) True G188816
TU255856 lncRNA upstream 166818 31918999 ~ 31927133 (+) True G188809
TU255825 lncRNA upstream 182652 31839806 ~ 31911299 (+) True G188785
TU256051 lncRNA downstream 37456 32143116 ~ 32143380 (+) True G188960
TU256062 lncRNA downstream 96602 32202262 ~ 32202553 (+) True G188971
XR_005637045.1 lncRNA downstream 123026 32228686 ~ 32229327 (+) True LOC120547295
TU256071 lncRNA downstream 132823 32238483 ~ 32238824 (+) True G188980
TU256084 lncRNA downstream 210640 32316300 ~ 32319175 (+) True G188987
XM_039782187.1 mRNA upstream 209149 31881465 ~ 31884802 (+) True nkx2.4b
XM_039782188.1 mRNA upstream 209149 31881465 ~ 31884802 (+) False nkx2.4b
XM_039782524.1 mRNA upstream 224655 31866894 ~ 31869296 (+) True nkx2.2b
XM_039782525.1 mRNA upstream 224655 31866894 ~ 31869296 (+) False nkx2.2b
XM_039780976.1 mRNA upstream 311885 31776963 ~ 31782066 (+) True LOC120546196
XM_039782818.1 mRNA downstream 5930 32111590 ~ 32145910 (+) True cd109
XM_039782844.1 mRNA downstream 430075 32535735 ~ 32569277 (+) True senp6a
XM_039782846.1 mRNA downstream 430075 32535735 ~ 32569277 (+) False senp6a
XM_039781369.1 mRNA downstream 470796 32576456 ~ 32767003 (+) True myo6a
XM_039780909.1 mRNA downstream 860537 32966197 ~ 33041169 (+) False mei4
TU255816 other upstream 312913 31777029 ~ 31781038 (+) False LOC120546196
TU255785 other upstream 483850 31606054 ~ 31610101 (+) False LOC120546816
XR_005637055.1 other upstream 589723 31504009 ~ 31504228 (+) True LOC120547352
XR_005637054.1 other upstream 592897 31500835 ~ 31501054 (+) True LOC120547351
XR_005637053.1 other upstream 594623 31499109 ~ 31499328 (+) True LOC120547350
TU256147 other downstream 470818 32576478 ~ 32622264 (+) False myo6a
TU256417 other downstream 1222443 33328103 ~ 33331713 (+) False pex7
TU256470 other downstream 1348336 33453996 ~ 33458768 (+) True G189269
TU256525 other downstream 1535960 33641620 ~ 33685556 (+) True G189309
XR_005637066.1 other downstream 1657805 33763465 ~ 33763626 (+) True LOC120547364

Expression Profile