RNA id: XM_039782846.1


Basic Information

Item Value
RNA id XM_039782846.1
length 3548
RNA type mRNA
GC content 0.57
exon number 19
gene id senp6a
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 32535735 ~ 32569277 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCGAGGTCCCTCTCACCGTAGCAACGTCCTCGCCCATGCCTAACAGAACCAACTATTTGATCATCAGCCGCCCCGCGCCTTCGCCAGGAATCGTTTTACAAGGGCGACACTTTCAGCACGCACAAATGCCCTCCGCAATAAGGAAACCAGTCCAAAGAAACGACTTCTCCACCTCGCAGCAAGCTGTAGAAGTGGACAGCATCGTCCTCACCTGTCCAGAGATCTCAGAGGACACCCTGAACATAAAGCGTCGCAGCATCCAGCACAAGAGGAAATCGTCGGAGGACTACTGTACTTTTCCTTCGCAGGTCAAAGCAGCCGAGCCTGTGCGGCCGACCGTCTACCATTCGGTGTGCCTGACGTGCAACAAGCCGAGCGAGGACGTCACCAAGTGTCAGAGCTGCGGGAGCGGCGCGGTGCTGCTGCCCTGTCCCCAGCAGGCCACGCTGTCATCCCTGACCCCGCGGCCCCCAATCCGGTCCCAGCCCTCCCCCGGACCAAACGGCCTGCCCCAGAACTTCTACAAACCGGCGACGACCATGAGGGGGCCGCGCGGAGAGACTCTGCCCGTACGGATCACGAGCATCAGGGGCAGCGTGCTGCCTCTGAGCAACGGCCGGCCGCCGCTGTTAGCCGGGACGTCGGGCTGCTGCGGAGCCAGGAACACGGGCAAAGGGAAGAGGGCCGCGGCGCAGCAGCACGAGCTCAACGACCCCATCGTCCTGTCCAGCGACGACGAGGAGGAGGCCGACAACGCGAGCACAGGAAGTGTCAACAGACTGGACAGCGTTTCCCCCCGGCCCGCCGACTCGGCCCACTCCTCGCCGGCGCCCTCTGGTGGCCGAGTGGAGGCGGCGGTGAAGAGCGCCGGCGGCGAGCCGGACGATCTGAACACGGGATTCTTCGAAGACGTCAACATGAAGATCACGATACCACGGAGAGCCCGCATGAAGGATCAGTTTGGAAATCAGCCCCCTGAGCAGTTTTCACCGCGGATAAAGAAGCCCAAATTCGCGCCCGACAAGTGTGGCAGCATCATACTGGAGTGTCGGAGCGTGAGGGTGGGAACTCTACGCAGGATGGTGACCAAGCCTGTCGTCtTTTCCATCGACCACGTCCAGCTGGAAACTGAAGGGCCGGAGCCCAACACGGTGGAGAAGGTTTGTCTTCAGGCGTCGGAGTTGATCAGCTGCGAGTGGTGCAGCGTCCGGAAACTTCCCGTCTTGTTCTTCCAGACGACTCAGGTCGAGTGCGTCCGCCTGCGCACGCAGCTCAACATGTCCAAGGAGAAGGGAGCGCATTGGTACGACTGCGCCGGGGACCAGTCGGATGAGAAGTTCATCGTTTTAATCTTTGAGAACGGCCTGGCGATGAAGGAGCAGGCCATCCTGGAGGACATCCTGGGCGAGATCGGCCGGACCAACAACCTCAGCAACTTCCCCGCCAAGCTGCCCTTCGAGGAGGCCAACATCCGCCTGGTCAACTACAACAAGGCATCCAAACAGAAGGAGGAGAAGGAGAAGCCGATTCAAACCCCTCCCAAAATCCCCCCAGCCTCCCCGGTGAGCCCGGTCGCCATGCCCAGTCGCACGCGCATGGCCACCCGTCAACACAACGGCGCCTACTTTGACGATGAAGAGGAGGACATGACGGACCTCCAGCCCACCTTCTCCGGACCAATTGTCAAATTAATGGTGTACCCTCCTCCTCCGGCCAAAGGGGGCATTTCGGTCACTAATGAAGACCTCCACTGCCTTAATGACGGAGAATTCCTAAACGACGTTATCATagacttttatttaaaATATTTAGTTTTAGAGAAATTGAAAAAAGAAGATGCACAAAGAATCCACGTGTTCAGCTCCTTCTTTTACAAGAGACTAAACCAGAGGGAGCGGAGGAACGCTCCCGACACAACAAACCTGCCAATCCAGAAAAGGAAGCACAACAGGGTTAAGACGTGGACTCGGCACGTGGATCTGTTCCAGAAGGACTTCATTTTCGTTCCCATCAACGAGTCAGCTCACTGGTACTTGGCGGTCATCTGCTTCCCGGGCCTCACGGCTCCGGTGTACGAGCCCAACCCGCTGCGCCACGGCGCCGACCCCCCGCCAGGGGAGGACATCCCGGACCACTGTCGTCCTCTGTCCCCAGACAGAGACGAGCTGGACGGCTACTCGGAGGACCCGTCCCCCGGCGTCCCCGAGGCGCCCACAGAGGGTCCGAGCGAGGAGAACGCAGCCTGCACGGAGGGGGCGGAGCCTTCCAACGCCACGGCAGCGTCGGGCAACGGCCTGGCTGACACAGAACAACACTACAGAAgtGAGTTGCACAGAATCAGCGTTTGCTACGGTTCAGGAAAAGGAGAGGACGACGCCTTCGCCTTCTCCGACGACCAAAGCTCCTGTCAGGATGAGTGCAGCGAGGACGGGACTCTGGCTGAAGACTCTGTGAGCTCGGACGCCTCGGCTCTGGCCTCCAAACTCAACGTCTGCAAGCAGCCTTGTATCCTCATCATGGACTCCCTGCGTGGTCCGGCCAGGTCGACTGTGGTGAAAACTTTGAGAGAGTACCTGGAGGTGGAGTGGGAGGTGCGTAAAGGGACTCAGCGGAGTTTCGGGAAGGATGTGATGAAGGGCTCCAGCCCACGTGTGCCTCAGCAGGATAACTTCAGCGACTGCGGAGTTTACATCCTGCAGTATGTGGAGAGCTTCTTCgagAATCCGATTCCCAGTTTCCATCTGCCGGTGAGCTTGTCCGAGTGGTTTCCCCAGCAACGGATGAAGACGAAGCGCGAGGAAATCAAGGAGCTGATCCTAAAGATCCAAGAGCAACAAGAACTGGAAAAGAAGGAGTCGGAGCGGCTCGGCTCTCCGCCCGGCTCTCCGCCCGGCTCTCCCGGAGAGCCTGAGATCGAAGAGACTTCTGAGTGGTTGGGCCGGCCGCCAAACCTACCCATCAGCCCCTGAAAGcaccctcatcctcctcctcctcctcctcctcctccccccgtCACTCCCAGGCCTGGCCgggggttgggggagggggacCGTCTGAAAACGGTCCCTCAGCTCCCTCCATTAACCACAGACATCAAACACAACGTCAGAGTtttctataaaataaaaaccaccATGAACTGTAAATATGCTGGAGTTTTTCCCGCTGCCTTTGTAATTTACCGTTTCATGACTCAAGTCATGAAGTGGCCCCGTTAAGTTATGTTTTCATagatgttcttcttcttcttctccgggAGGATCTGTGCAGAAGATACTGTTGGTCTCTCGCATCGTTATTTTCTATGCTTTCTAGTTGTGTAGAGGAAGACAAAAACaatgacacaaaaacaacaaaacacacacacacacaacacttagAGGACGTTGCTGTTATTTGTAAGTTATTAACAATCCACCCCGTCTGGGGGGGAAAAAGAAACTTGTTTTCAGGAGGTTGGCGAGTCACATAGTTCAGTGCTTGTTGTGTCTCTTCGATGTGGAGTGGATGCATTCTCAGCATTAAAAGCAACTCTGGATGCAAGAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005637046.1 lncRNA upstream 508 32525522 ~ 32535227 (+) True LOC120547301
TU256143 lncRNA upstream 508 32525562 ~ 32535227 (+) False LOC120547301
TU256141 lncRNA upstream 20088 32515355 ~ 32515647 (+) True G189024
TU256137 lncRNA upstream 57243 32477854 ~ 32478492 (+) True G189020
TU256130 lncRNA upstream 79492 32454698 ~ 32456243 (+) True G189013
TU256159 lncRNA downstream 80553 32649830 ~ 32650345 (+) True G189035
TU256162 lncRNA downstream 185313 32754590 ~ 32755953 (+) True G189037
TU256158 lncRNA downstream 189564 32758841 ~ 32761089 (+) True G189034
TU256261 lncRNA downstream 395997 32965274 ~ 32965502 (+) True G189114
TU256263 lncRNA downstream 396561 32965838 ~ 32966364 (+) False mei4
XM_039782818.1 mRNA upstream 389825 32111590 ~ 32145910 (+) True cd109
XM_039782828.1 mRNA upstream 430075 32093951 ~ 32105660 (+) True crnkl1
XM_039782187.1 mRNA upstream 650933 31881465 ~ 31884802 (+) True nkx2.4b
XM_039782188.1 mRNA upstream 650933 31881465 ~ 31884802 (+) False nkx2.4b
XM_039782525.1 mRNA upstream 666439 31866894 ~ 31869296 (+) False nkx2.2b
XM_039781369.1 mRNA downstream 7179 32576456 ~ 32767003 (+) True myo6a
XM_039780909.1 mRNA downstream 396920 32966197 ~ 33041169 (+) False mei4
XM_039780908.1 mRNA downstream 406677 32975954 ~ 33041169 (+) True mei4
XM_039780910.1 mRNA downstream 406677 32975954 ~ 33009771 (+) False mei4
XM_039782728.1 mRNA downstream 530092 33099369 ~ 33127591 (+) True nt5e
TU255816 other upstream 754697 31777029 ~ 31781038 (+) False LOC120546196
TU255785 other upstream 925634 31606054 ~ 31610101 (+) False LOC120546816
XR_005637055.1 other upstream 1031507 31504009 ~ 31504228 (+) True LOC120547352
XR_005637054.1 other upstream 1034681 31500835 ~ 31501054 (+) True LOC120547351
XR_005637053.1 other upstream 1036407 31499109 ~ 31499328 (+) True LOC120547350
TU256147 other downstream 7201 32576478 ~ 32622264 (+) False myo6a
TU256417 other downstream 758826 33328103 ~ 33331713 (+) False pex7
TU256470 other downstream 884719 33453996 ~ 33458768 (+) True G189269
TU256525 other downstream 1072343 33641620 ~ 33685556 (+) True G189309
XR_005637066.1 other downstream 1194188 33763465 ~ 33763626 (+) True LOC120547364

Expression Profile