RNA id: XM_039782858.1


Basic Information

Item Value
RNA id XM_039782858.1
length 2178
RNA type mRNA
GC content 0.40
exon number 8
gene id LOC120547308
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 16189000 ~ 16195106 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACTCTTTCTTTAAGTTTCACTTTCTGTTGTCTGTAAACGTAGACTACTGGATTTACGAAAGTAAAGCGGAAATACGGTCTCGaaggtttttgttttatttcggTTAGGTACTTGACAGCTATAACTGCAGCAACGGCGGACACTAATTTACCAAATTATTGACTTCAATCATCTATCTTGTGTTCGATCAGATCAAagatctctttctctttccttcctccatcTTCGAGCTCAGCTTGTCCACACAGCAGGAGaagtcatgtcacgattattgGCTGAAATAAGGCGCAGCAACAAAGCAGCCGCTCAAGTGTTGGAAAAGGCAGGTTTACGCACTGACGCTGACATCCAGTCACTGACTCGAGAGGAACTGCACGAACTGTTTCCTAAACATGAGAATTTCAAACTGAGAAGGGCCATCTTTGACATAATACAAAAACAGAAGCCAATTGATGTGATCCTAAGAGAACTGAAAGATTTCATCCCACATGAATCTTTCAGGAcTGCTCTATCCAACAACGGGGTCTTGGTTGATTACCTCCATATCCTGAAGGACATTAAGACCCAAATAAACAATGTCCAGAGTTTCCTTGATGCTCACATCGATATGCTGGAAGAATTCAGCAAAAATCCGCCAGATCAGGAGCCAGTCTCCTGTAATCCAGTGAAGCTCCCCAGTGGCCAGCCTGATGGCCGTTCACAAGGAGCACAAGGTACAGGTACCTCGGACACCAGTGGTCGAATGATGCTCCATACTGGCCAAACTGGTGGCCATCCACAAGGTCCTCAAACCACATTGGAGTACAAGATGATTGTTGGCAGTAAAACCTTTGGTGCACATCAACAGCTGATGGAGAAAGTTCGGGATCAAGTTCAGGATCAAGTTCAGCTCATTGAAAGCAGTCAGGATTACAAGCTCACTTTTGTCTTCTGCCCGATCAGTTCACGCGTTGCATCAGATGTTGAGGCAGCCATGACTGATGTTAGAGATGATACACCTGTCATTCTGGTGTTGATGCACCACACACGAGAGGTCAAGTACACAACATCTATGAGAACATGGCCAGCCTACGCTAACGTTGTGTTGCATGTCAACGTTTTCTATCATGAGACAATGCGTGGATTACTGAAGGATCAACAAAATGATGCCGCTGTTACCCAGATACAAAACAAATTACTGGAGTGTTTTGTTCCAAAAAGTTAACATTTCAGTGGAAATGCTCAGGGTGGGGATGCTGCAAGTGGTTTGGCTTGTAGTACTTCTGTTAGAGGTGGTGGTAACAACAGGTCTTCTGAAGCTGATGGTAATAGCGGTGTTTTTAGTAGACTAAAAGGTGTTACATCTCTGTGGCAATAGGCTGTGTTGGGCGGTATCCATGATGTTAATATTGAAGTTCACATCCCAAGTAAAACAATATGTAATGGATTACATCAAcagcaaaaataaatcaataaaaacatattgATTTAGACCATTTACTGtttgcagaaaacattttatcCTCCTTGGTAAAATAAGATCAGCTACTGATTGTGGTCTAATGGTGTCATGTATTCATGTTAATCATGGGTGTAAATactgtagctaaacacagagttcTCTGTCCATTTCCTGCTATTGTGTTTCTAAAGCTACATCATGTGACTTGTGGTTTGGTAACTGTTGATGCAAACAGTCAACACTTAAAAAAACTTTGACTTATTTAAAATATGAGTCAGACTTTATACTGTAgatcaaagaaaagaaaaatgttgacGAGTatttgagctgctgttaacCATCAGACTTTAGGGAGAGTTTTGGTTTAAAGTAGCTAAGTTAAAATGTGACCTTAAAACAGGATTTCTATAATCAAATGTCGTGGTCAGTTCTACAGCTGCgactgttgtttgtgtatattaGTAAGACTTGAATGTACATTAAGTGATGAAAGAGTGCAAAGGCCACAAAGTAGGTAACTTACAAATTATCTTTGTGTTTATCTACTGTAGGACAGATATTaaacaatttatgtaaaaataaagaataaacatTAAGATATTGTTTTGTATTAAAGCATGAATGTGCATTTTTGCTTTACCTTATTGCAAAATCATGTTGCAGGAAGCGTATGTAAGATGTGATGATTACTATACCCAACACTTACATGTAACAATAAACTGCAAGTATGGGTGTTA

Function

GO:

id name namespace
GO:0046686 response to cadmium ion biological_process

KEGG:

id description
ko04621 NOD-like receptor signaling pathway
ko04612 Antigen processing and presentation
ko05340 Primary immunodeficiency

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250143 lncRNA downstream 23843 16146590 ~ 16165157 (-) False LOC120546332
TU250145 lncRNA downstream 23843 16146590 ~ 16165157 (-) False LOC120546332
TU250105 lncRNA downstream 43831 16125385 ~ 16145169 (-) True LOC120546331
XR_005636864.1 lncRNA downstream 43838 16125501 ~ 16145162 (-) False LOC120546331
TU250127 lncRNA downstream 88268 16100144 ~ 16100732 (-) True G184707
TU250156 lncRNA upstream 55092 16250197 ~ 16251869 (-) True G184730
TU250157 lncRNA upstream 96285 16291390 ~ 16356567 (-) True G184731
TU250183 lncRNA upstream 184340 16379445 ~ 16382479 (-) True G184755
TU250201 lncRNA upstream 238996 16434101 ~ 16434513 (-) True G184762
TU250257 lncRNA upstream 255649 16450754 ~ 16535319 (-) False G184801
XM_039781213.1 mRNA downstream 670 16146656 ~ 16188330 (-) True LOC120546332
XM_039781212.1 mRNA downstream 1145 16146656 ~ 16187855 (-) False LOC120546332
XM_039782769.1 mRNA downstream 80428 16102053 ~ 16108572 (-) True il20ra
XM_039782021.1 mRNA downstream 90278 16082024 ~ 16098722 (-) False ehd3
XM_039782020.1 mRNA downstream 90278 16082024 ~ 16098722 (-) True ehd3
XM_039782657.1 mRNA upstream 13154 16208259 ~ 16231901 (-) True LOC120547182
XM_039782791.1 mRNA upstream 180781 16375886 ~ 16379169 (-) True hddc2
XM_039782799.1 mRNA upstream 206157 16401262 ~ 16409291 (-) False LOC120547270
XM_039782798.1 mRNA upstream 206157 16401262 ~ 16407197 (-) False LOC120547270
XM_039782797.1 mRNA upstream 206157 16401262 ~ 16406714 (-) True LOC120547270
TU250064 other downstream 397442 15788914 ~ 15791558 (-) False si:dkey-177p2.18
TU249614 other downstream 1609831 14571755 ~ 14579169 (-) False naa30
TU249578 other downstream 1690630 14472201 ~ 14498370 (-) True G184299
TU249319 other downstream 2697872 13481924 ~ 13491128 (-) False mfsd2b
TU249306 other downstream 2720935 13458616 ~ 13468065 (-) True fkbp1b
XR_005636881.1 other upstream 295545 16490650 ~ 16517872 (-) False snap91b
XR_005637006.1 other upstream 634691 16829796 ~ 16835983 (-) False gpatch2
XR_005637059.1 other upstream 1566851 17761956 ~ 17762038 (-) True LOC120547356
XR_005637061.1 other upstream 1567293 17762398 ~ 17762482 (-) True LOC120547359
XR_005637056.1 other upstream 1567628 17762733 ~ 17762808 (-) True LOC120547353

Expression Profile