Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_039782864.1 |
| length | 1063 |
| RNA type | mRNA |
| GC content | 0.43 |
| exon number | 4 |
| gene id | sf3b6 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_053129.1 |
| NCBI id | CM020926.1 |
| chromosome length | 36987114 |
| location | 10662117 ~ 10666300 (-) |
| genome version | GENO_Pfluv_1.0_2020_eurasian_perch_Genome |
| species | eurasian perch (Perca fluviatilis) |
| id | name | namespace |
|---|---|---|
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0006739 | NADP metabolic process | biological_process |
| GO:0055114 | oxidation-reduction process | biological_process |
| GO:0005654 | nucleoplasm | cellular_component |
| GO:0005689 | U12-type spliceosomal complex | cellular_component |
| GO:0003960 | NADPH | molecular_function |
| GO:0042803 | protein homodimerization activity | molecular_function |
| GO:0003723 | RNA binding | molecular_function |
| GO:0008270 | zinc ion binding | molecular_function |
| GO:0070402 | NADPH binding | molecular_function |
| GO:0048038 | quinone binding | molecular_function |
| id | description |
|---|---|
| K12833 | SF3B14; pre-mRNA branch site protein p14 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU248541 | lncRNA | downstream | 70779 | 10591080 ~ 10591338 (-) | True | G183534 |
| TU248538 | lncRNA | downstream | 95953 | 10565916 ~ 10566164 (-) | True | G183531 |
| TU248537 | lncRNA | downstream | 103998 | 10557487 ~ 10558119 (-) | True | G183530 |
| TU248503 | lncRNA | downstream | 428549 | 10220918 ~ 10233568 (-) | True | G183497 |
| TU248497 | lncRNA | downstream | 444991 | 10216351 ~ 10217126 (-) | True | G183492 |
| TU248626 | lncRNA | upstream | 88696 | 10754996 ~ 10780282 (-) | True | G183594 |
| TU248658 | lncRNA | upstream | 281516 | 10947816 ~ 10948114 (-) | True | G183616 |
| TU248663 | lncRNA | upstream | 297532 | 10963832 ~ 10964049 (-) | True | G183621 |
| TU248683 | lncRNA | upstream | 523354 | 11189654 ~ 11210793 (-) | True | G183639 |
| TU248701 | lncRNA | upstream | 780675 | 11446975 ~ 11447319 (-) | True | G183656 |
| XM_039781966.1 | mRNA | downstream | 51492 | 10455244 ~ 10610625 (-) | False | LOC120546776 |
| XM_039781967.1 | mRNA | downstream | 51492 | 10501920 ~ 10610625 (-) | False | LOC120546776 |
| XM_039781965.1 | mRNA | downstream | 51492 | 10602470 ~ 10610625 (-) | True | LOC120546776 |
| XM_039782068.1 | mRNA | downstream | 212707 | 10398802 ~ 10449410 (-) | False | fam49a |
| XM_039782069.1 | mRNA | downstream | 212707 | 10398802 ~ 10449410 (-) | False | fam49a |
| XM_039780998.1 | mRNA | upstream | 27539 | 10693839 ~ 10708837 (-) | True | pla2g7 |
| XM_039780999.1 | mRNA | upstream | 27539 | 10693839 ~ 10708835 (-) | False | pla2g7 |
| XM_039781001.1 | mRNA | upstream | 58170 | 10724470 ~ 10728525 (-) | True | glrx5 |
| XM_039782719.1 | mRNA | upstream | 879886 | 11546186 ~ 11548350 (-) | True | LOC120547228 |
| XM_039781328.1 | mRNA | upstream | 909173 | 11575473 ~ 11576057 (-) | True | LOC120546403 |
| XR_005636937.1 | other | downstream | 51492 | 10501920 ~ 10610625 (-) | False | LOC120546776 |
| TU248535 | other | downstream | 140707 | 10520717 ~ 10521410 (-) | True | G183528 |
| TU248390 | other | downstream | 561056 | 10099603 ~ 10101061 (-) | False | LOC120546281 |
| TU248116 | other | downstream | 1528645 | 9129573 ~ 9133472 (-) | True | G183176 |
| TU247995 | other | downstream | 1874900 | 8783788 ~ 8787217 (-) | False | LOC120546397 |
| TU248695 | other | upstream | 707808 | 11374108 ~ 11374615 (-) | True | G183650 |
| unassigned_transcript_1080 | other | upstream | 1916869 | 12583169 ~ 12583241 (-) | True | trnat-ugu_2 |
| TU249125 | other | upstream | 2294198 | 12960498 ~ 13007868 (-) | True | LOC120547209 |
| TU249198 | other | upstream | 2527777 | 13194077 ~ 13215824 (-) | False | hmgn3 |
| TU249194 | other | upstream | 2540007 | 13206307 ~ 13215824 (-) | False | hmgn3 |
