RNA id: XR_005636851.1


Basic Information

Item Value
RNA id XR_005636851.1
length 352
lncRNA type inter_gene
GC content 0.48
exon number 3
gene id LOC120546283
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 23475699 ~ 23506564 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TAAGCGCTGACTGCAGAGAATCACGGGCCTGAACTCATTTACAGCGAGAATACATCACATTGAGTTGGAAAGTAGACACAGCTCATTTTAGTAATCTACATCACAGGAATATATGGCCAAAGgctttcCACAAGATTGCGAAacctggctgcagggattttACACAAGAGCATCAGTGAGATCGGGCACCGATGTTGGACAATAAGGCCTCACAGTCGTTCCAGTTAATCCCAGAGGATGGAGTTGAGGTCAGAGCGCTGTGCAGATTTCAGATCAGTGAGGGTTTTTCCCCCCCACTTGTGCTCCAGTTGGCTGGTCTCCACAGAGCTTGAAGGAAAGTCACAACATTCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU253107 lncRNA upstream 36179 23438240 ~ 23439520 (+) True G186841
TU253109 lncRNA upstream 40348 23435136 ~ 23435351 (+) True G186843
TU253108 lncRNA upstream 43316 23420899 ~ 23432383 (+) True G186842
TU252986 lncRNA upstream 200239 23268798 ~ 23275460 (+) True G186747
TU252966 lncRNA upstream 278704 23196716 ~ 23196995 (+) False rsph3
TU253175 lncRNA downstream 55712 23562276 ~ 23564295 (+) False tcte1
TU253166 lncRNA downstream 96072 23602636 ~ 23607535 (+) True G186882
TU253189 lncRNA downstream 141015 23647579 ~ 23649568 (+) True G186901
TU253190 lncRNA downstream 143832 23650396 ~ 23658430 (+) True G186902
TU253196 lncRNA downstream 160373 23666937 ~ 23668127 (+) True G186905
XM_039782913.1 mRNA upstream 80363 23391206 ~ 23395336 (+) True hlx1
XM_039782914.1 mRNA upstream 80363 23391207 ~ 23395336 (+) False hlx1
XM_039782697.1 mRNA upstream 94485 23371884 ~ 23381214 (+) True slc35f6
XM_039782616.1 mRNA upstream 127343 23307723 ~ 23348356 (+) True kcnk3a
XM_039781401.1 mRNA upstream 222250 23246999 ~ 23253449 (+) True LOC120546473
XM_039781132.1 mRNA downstream 16323 23522887 ~ 23539844 (+) False mia3
XM_039781133.1 mRNA downstream 16324 23522888 ~ 23539844 (+) False mia3
XM_039781128.1 mRNA downstream 16327 23522891 ~ 23539844 (+) True mia3
XM_039781131.1 mRNA downstream 16327 23522891 ~ 23539844 (+) False mia3
XM_039781129.1 mRNA downstream 16327 23522891 ~ 23539844 (+) False mia3
TU252499 other upstream 1410110 21985779 ~ 22065589 (+) True G186394
TU252459 other upstream 1528699 21944743 ~ 21947000 (+) True erh
TU251678 other upstream 3615494 19856735 ~ 19860205 (+) False kif25
TU251521 other upstream 3827543 19634283 ~ 19648156 (+) False acp1
XR_005636890.1 other upstream 3936491 19429596 ~ 19539208 (+) False nhsl1b
XR_005636956.1 other downstream 71814 23578378 ~ 23589689 (+) True nfkbie
XR_005636955.1 other downstream 71814 23578378 ~ 23588514 (+) False nfkbie
TU253325 other downstream 573039 24079603 ~ 24083104 (+) True G186975
TU253479 other downstream 1000349 24506913 ~ 24507813 (+) True G187094
TU253601 other downstream 1497455 25004019 ~ 25009407 (+) False lama2

Expression Profile