RNA id: XR_005636861.1


Basic Information

Item Value
RNA id XR_005636861.1
length 210
lncRNA type inter_gene
GC content 0.49
exon number 3
gene id LOC120546306
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 28500729 ~ 28504391 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGGCCTGAGCCAACACATTTTCTGGAATTGCCGACAAATTTGCTAGAGATTTCATCGCTTTGGAACAATAAGAAGTGCTTGTGGCAACTGCCTTGAGGGCTCTTCACAGCTGCTTTGTCAGTGGGCCTCAGTACACTGGAGATAAAGCTGACCAACCACAGATCATTCCAAAGACCTTCATCGCTAAGGGAACCATTGTGGGCAACGGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254549 lncRNA upstream 80467 28419992 ~ 28420262 (+) True G187915
TU254535 lncRNA upstream 123089 28365238 ~ 28377640 (+) True G187906
TU254507 lncRNA upstream 304043 28177401 ~ 28196686 (+) True G187886
TU254499 lncRNA upstream 334402 28163132 ~ 28166327 (+) True G187878
TU254505 lncRNA upstream 371807 28128566 ~ 28128922 (+) True G187884
TU254578 lncRNA downstream 135063 28639454 ~ 28649123 (+) False afdna
TU254729 lncRNA downstream 368295 28872686 ~ 28875341 (+) True ttll2
TU254731 lncRNA downstream 374357 28878748 ~ 28880435 (+) True G188057
TU254745 lncRNA downstream 410011 28914402 ~ 28914798 (+) True G188069
TU254770 lncRNA downstream 426667 28931058 ~ 28944726 (+) True G188091
XM_039781942.1 mRNA upstream 33856 28393107 ~ 28466873 (+) True ncoa1
XM_039781943.1 mRNA upstream 34925 28393107 ~ 28465804 (+) False ncoa1
XM_039780980.1 mRNA upstream 117645 28381682 ~ 28383084 (+) True ptrhd1
XM_039782368.1 mRNA upstream 120881 28203631 ~ 28379848 (+) False fam184ab
XM_039782328.1 mRNA downstream 35009 28539400 ~ 28649123 (+) True afdna
XM_039782329.1 mRNA downstream 164871 28669262 ~ 28689591 (+) True rfx6
XM_039780988.1 mRNA downstream 236777 28741168 ~ 28748192 (+) True vgll2a
XM_039780987.1 mRNA downstream 236777 28741168 ~ 28748192 (+) False vgll2a
XM_039782245.1 mRNA downstream 268934 28773325 ~ 28786818 (+) True plg
unassigned_transcript_1088 other upstream 1518936 26981721 ~ 26981793 (+) True trnat-cgu_2
unassigned_transcript_1087 other upstream 1610373 26890284 ~ 26890356 (+) True trnaa-agc_23
unassigned_transcript_1086 other upstream 1613523 26887134 ~ 26887206 (+) True trnaa-agc_22
unassigned_transcript_1085 other upstream 1620496 26880161 ~ 26880233 (+) True trnaa-agc_21
unassigned_transcript_1084 other upstream 1621108 26879533 ~ 26879621 (+) True trnay-gua_55
TU254572 other downstream 135063 28639454 ~ 28649123 (+) False afdna
TU254581 other downstream 135063 28639454 ~ 28649123 (+) False afdna
unassigned_transcript_1089 other downstream 148211 28652602 ~ 28652684 (+) True trnal-cag_2
TU254737 other downstream 382099 28886490 ~ 28891364 (+) True G188063
TU254854 other downstream 629780 29134171 ~ 29136917 (+) True G188167

Expression Profile