RNA id: XR_005636916.1


Basic Information

Item Value
RNA id XR_005636916.1
length 519
lncRNA type inter_gene
GC content 0.46
exon number 3
gene id LOC120546689
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 36124774 ~ 36127996 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTTGAGGGCTCTTCACAGCTGCTTTGTCAGTGGGCCTCAGTACACTGGAGATAAAGCTGACCAACCACAGATCATTCCAAAGACCTTCATCGCTAAGGGAACCATTGTGGGCAACGGACACGAAAACTGGGCTCTCCTGAGGCTGCTTCCATTGATGGACCATGGGAAGCTATAAACTAAGAATCATCATAAATGAAGGGGACATACGGAAAGTGTCACTGGACAGAAAACCAGAAACGGTTGAAGAGCTGaagataaaagtcaaagaaaaatGCAACCTGCAGGATGACTTCAATCTTATGTATGAAGACCCTGACTTTGGTTATTCCCTCTGCAACCTAGATGACATAGGAGACTTGCCAGCTACAAAAGCAACTGTGAAGGTCATTTCATTGGTGACACTGACACTGGTGCCTGCTTCCACCACCAGCATTTCTGATGCCTCAAATGTCTCAGATGATACAGAGATTCTGTCGACATACagctcatcatcatcaacaagaCAAGAGCAATGGCCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU257413 lncRNA upstream 37072 36056533 ~ 36087702 (+) True G189869
TU257390 lncRNA upstream 106608 35970775 ~ 36018166 (+) False G189857
TU257404 lncRNA upstream 107447 36014014 ~ 36017327 (+) True G189860
TU257385 lncRNA upstream 108885 35970775 ~ 36015889 (+) False G189857
TU257391 lncRNA upstream 161694 35955934 ~ 35963080 (+) False G189857
XR_005636907.1 lncRNA downstream 3702 36131698 ~ 36133095 (+) True LOC120546684
XR_005636918.1 lncRNA downstream 32522 36160518 ~ 36165136 (+) True LOC120546691
TU257429 lncRNA downstream 50920 36178916 ~ 36179450 (+) True G189879
TU257430 lncRNA downstream 50920 36178916 ~ 36179450 (+) False G189879
TU257432 lncRNA downstream 50920 36178916 ~ 36179450 (+) False G189879
XM_039781768.1 mRNA upstream 207249 35912496 ~ 35917525 (+) False zbtb25
XM_039781769.1 mRNA upstream 207249 35912536 ~ 35917525 (+) True zbtb25
XM_039781390.1 mRNA upstream 246833 35860792 ~ 35877941 (+) True LOC120546463
XM_039781750.1 mRNA upstream 268743 35843762 ~ 35856031 (+) True LOC120546647
XM_039781738.1 mRNA downstream 104954 36232950 ~ 36257742 (+) True LOC120546641
XM_039781731.1 mRNA downstream 141292 36269288 ~ 36313267 (+) True LOC120546639
XM_039781730.1 mRNA downstream 141292 36269288 ~ 36313267 (+) False LOC120546639
XM_039781735.1 mRNA downstream 141292 36269288 ~ 36313267 (+) False LOC120546639
XM_039781733.1 mRNA downstream 141292 36269288 ~ 36313267 (+) False LOC120546639
TU257395 other upstream 105175 35981818 ~ 36019599 (+) True G189858
TU257398 other upstream 105175 35981818 ~ 36019599 (+) False G189858
TU257342 other upstream 208296 35912520 ~ 35916478 (+) False zbtb25
TU257294 other upstream 594431 35526848 ~ 35530343 (+) False LOC120546462
TU257245 other upstream 824796 35298961 ~ 35299978 (+) True G189769
TU257460 other downstream 85885 36213881 ~ 36214599 (+) True G189895
TU257465 other downstream 246304 36374300 ~ 36375834 (+) True G189897
TU257496 other downstream 254912 36382908 ~ 36398240 (+) False LOC120546466
TU257528 other downstream 408683 36536679 ~ 36541312 (+) True G189944
TU257569 other downstream 524207 36652203 ~ 36653482 (+) False xrcc3

Expression Profile