RNA id: XR_005636945.1


Basic Information

Item Value
RNA id XR_005636945.1
length 357
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id LOC120546800
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 6939952 ~ 6940460 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACAGACcgctaaaattaattaattaaatacataGTGACAACTTCCATTTTTATAAAGGTACAGGAAATATGGTATGGTTTATGGAACAAATATGAGGAAATATTTGTGAAAGTCTGAGTTTGGCAACTCCACCCGTGTCCTGACGAGGAGCGGTTTTGGCTGGGTTGAAACACCCGAGAATTGAGacatcttaaaaacaaaaaggttaagTTAAGGTTAATAAGGGTAAGTCCTCCATAGTAGAGGTAAGTCCCAGGTAATTGTAGGGGTAAGTCCTCCATAGTAGAGGTAAGTCCCCCGGGGTAAGTCCTCCATAGTAGAGGTAAGTCCCCTGGGGTAAGTCCTCCACAGTAGAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU247622 lncRNA downstream 5929 6927060 ~ 6934023 (-) True G182828
TU247625 lncRNA downstream 5929 6927060 ~ 6934023 (-) False G182828
XR_005636949.1 lncRNA downstream 68708 6868475 ~ 6871244 (-) True LOC120546804
TU247576 lncRNA downstream 183120 6756575 ~ 6756832 (-) True G182789
XR_005636950.1 lncRNA downstream 207240 6732157 ~ 6732712 (-) True LOC120546805
TU247647 lncRNA upstream 103256 7043716 ~ 7044084 (-) True G182848
TU247649 lncRNA upstream 116546 7057006 ~ 7057219 (-) True G182850
XR_005636943.1 lncRNA upstream 387914 7328374 ~ 7331535 (-) False LOC120546799
XR_005636942.1 lncRNA upstream 387918 7328378 ~ 7331535 (-) True LOC120546799
TU247716 lncRNA upstream 402684 7343144 ~ 7344677 (-) True G182913
XM_039781984.1 mRNA downstream 139159 6762711 ~ 6800793 (-) True meis2b
XM_039781999.1 mRNA downstream 475150 6462940 ~ 6464802 (-) True LOC120546794
XM_039781988.1 mRNA downstream 682817 6232742 ~ 6257135 (-) False cgrrf1
XM_039782002.1 mRNA upstream 504401 7444861 ~ 7588065 (-) False cnih3
XM_039782001.1 mRNA upstream 504401 7444861 ~ 7588065 (-) False cnih3
XM_039782000.1 mRNA upstream 504401 7444861 ~ 7588065 (-) True cnih3
XM_039780984.1 mRNA upstream 1108998 8049458 ~ 8126664 (-) False opn5
XM_039780983.1 mRNA upstream 1108998 8049458 ~ 8126664 (-) True opn5
TU247550 other downstream 238835 6700491 ~ 6701117 (-) True G182764
TU247260 other downstream 1028043 5911312 ~ 5911909 (-) True G182502
TU247229 other downstream 1147014 5790289 ~ 5792938 (-) True G182474
TU246981 other downstream 2136482 4798921 ~ 4803470 (-) False smim8
unassigned_transcript_1029 other upstream 86682 7027142 ~ 7027214 (-) True trnak-uuu_18
unassigned_transcript_1030 other upstream 89514 7029974 ~ 7030046 (-) True trnak-uuu_19
unassigned_transcript_1031 other upstream 91187 7031647 ~ 7031723 (-) True trnak-uuu_20
unassigned_transcript_1032 other upstream 92870 7033330 ~ 7033402 (-) True trnak-uuu_21
TU247776 other upstream 821105 7761565 ~ 7766386 (-) True G182952