RNA id: XR_005636968.1


Basic Information

Item Value
RNA id XR_005636968.1
length 338
lncRNA type inter_gene
GC content 0.50
exon number 3
gene id LOC120546865
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 29787961 ~ 29793679 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGAGACTAGTTTCAACAAACGGTTAAAACACTGATGAGAGTCCTGACTGAACTGAGTGAGGCGACTGGGACAGGAGAAAAAGTCAGAGGACATCTGGTGGACAGGAAGAGAATGGCAGTGAACTGGTTTGAGGAAGTGTGAATGTCCACCGTCGCGttcccgtctaaaggggagaggagagggagagaagaagaaggaaggtGCCCGGACTTGGTGTTGTGTGTCAGTGCTTCACACTACCACCTAGCTGCCTGGACAAAGTGACTTCATCTCCATCTCTGACAGTGGAGGAGAGCAGAAACTGTCTGTTTGCTGCTGCTGAGAAGatgagagagaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005636962.1 lncRNA upstream 127226 29659256 ~ 29660735 (+) True LOC120546861
TU255008 lncRNA upstream 182862 29579635 ~ 29605099 (+) True G188290
TU255005 lncRNA upstream 209859 29576224 ~ 29578102 (+) True G188288
TU254998 lncRNA upstream 249509 29538175 ~ 29538452 (+) True G188281
TU254866 lncRNA upstream 340938 29443347 ~ 29447023 (+) True G188177
XR_005636969.1 lncRNA downstream 93185 29886864 ~ 29888884 (+) True LOC120546868
TU255051 lncRNA downstream 135163 29928842 ~ 29985502 (+) True G188321
TU255055 lncRNA downstream 138871 29932550 ~ 29932860 (+) True G188323
XR_005636975.1 lncRNA downstream 140915 29934594 ~ 29935486 (+) True LOC120546875
TU255056 lncRNA downstream 146527 29940206 ~ 30032961 (+) False LOC120546873
XM_039781412.1 mRNA upstream 416811 29315759 ~ 29371150 (+) True LOC120546480
XM_039782701.1 mRNA upstream 483021 29292705 ~ 29304940 (+) True si:ch211-245h14.1
XM_039782099.1 mRNA downstream 67695 29861374 ~ 29875824 (+) True LOC120546866
XM_039782100.1 mRNA downstream 83242 29876921 ~ 29882724 (+) True LOC120546867
XM_039782112.1 mRNA downstream 101746 29895425 ~ 29943833 (+) False LOC120546870
XM_039782109.1 mRNA downstream 101746 29895425 ~ 29906694 (+) False LOC120546870
XM_039782111.1 mRNA downstream 101746 29895425 ~ 29906694 (+) False LOC120546870
TU255018 other upstream 142138 29645254 ~ 29645823 (+) True G188296
TU254981 other upstream 324087 29461849 ~ 29463874 (+) True G188268
TU254910 other upstream 367234 29419376 ~ 29420727 (+) True G188207
TU254892 other upstream 475597 29292741 ~ 29312364 (+) False si:ch211-245h14.1
unassigned_transcript_1091 other downstream 579987 30373666 ~ 30373738 (+) True trnat-ugu_4
TU255132 other downstream 830801 30624480 ~ 30659281 (+) False G188352
XR_005636985.1 other downstream 1000540 30794219 ~ 30812143 (+) False LOC120546905
TU255105 other downstream 1060296 30853975 ~ 30855364 (+) False G188352
XR_005637052.1 other downstream 1704276 31497955 ~ 31498174 (+) True LOC120547349

Expression Profile