RNA id: XR_005636970.1


Basic Information

Item Value
RNA id XR_005636970.1
length 551
lncRNA type intronic
GC content 0.43
exon number 4
gene id LOC120546872
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 30054358 ~ 30056424 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ccctcctctgctccacagcgtgtggatggtctgacGAAGTGAGACTATAGAGTGGTTGACCCTGATTACTGAATGTCTGCACCTGCTGATTAGCTGGTGTTTGTTAATGTTTCACTTCAATCTTTTGCCTGTAACTTCCTGAAGAAGACTGGACGCCGAAACGCGTTGAAGTGATGTTTTTAAGGTTATTCTAGAGAGAATGGACCAGATGGATTAAAgTCCTTCTCTCTCCAGGTTGGGGGAGGATCCTCTTTGTGCCCGTGGGTTTAGCAGCTCTCATAATAATTGTTGTGGCGGTCAACATGTGGACGAGAGCTAAAGAGAAGAAAACACAGACGGAGGAAATCGCTGTGCGTTATGATGTAGATGATGATACAGTGAACTATGAAAACATCAGATCTCCTGATGGAGTTTGACCAACACTTCTGCCTCCATCAGACTCCACTGATCAACTCGTCACCTTTTACTGGACTAGTTCAAGACTGGAAATAACTAAAAGAATCATTAAGGCTTATTTCATTTTAGTCTGATGTATTTTCCTGCATCAATTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005636973.1 lncRNA upstream 19157 30030900 ~ 30035201 (+) True LOC120546873
XR_005636972.1 lncRNA upstream 19157 30032681 ~ 30035201 (+) False LOC120546873
TU255056 lncRNA upstream 21397 29940206 ~ 30032961 (+) False LOC120546873
TU255073 lncRNA upstream 26553 30027137 ~ 30027805 (+) True G188333
TU255051 lncRNA upstream 68856 29928842 ~ 29985502 (+) True G188321
TU255014 lncRNA downstream 14585 30071009 ~ 30072741 (+) True G188294
TU255086 lncRNA downstream 40298 30096722 ~ 30097235 (+) False btbd9
TU255087 lncRNA downstream 41302 30097726 ~ 30098348 (+) True G188344
TU255088 lncRNA downstream 42676 30099100 ~ 30099414 (+) True G188345
TU255092 lncRNA downstream 60286 30116710 ~ 30118259 (+) True G188347
XM_039781362.1 mRNA upstream 31716 30012155 ~ 30022642 (+) True LOC120546436
XM_039782109.1 mRNA upstream 147664 29895425 ~ 29906694 (+) False LOC120546870
XM_039782101.1 mRNA downstream 17024 30073448 ~ 30083063 (+) False LOC120546869
XM_039782107.1 mRNA downstream 17024 30073448 ~ 30083063 (+) False LOC120546869
XM_039782104.1 mRNA downstream 17024 30073448 ~ 30083063 (+) False LOC120546869
XM_039782103.1 mRNA downstream 17024 30073448 ~ 30083063 (+) False LOC120546869
XM_039782102.1 mRNA downstream 20210 30076634 ~ 30083063 (+) True LOC120546869
TU255018 other upstream 408535 29645254 ~ 29645823 (+) True G188296
TU254981 other upstream 590484 29461849 ~ 29463874 (+) True G188268
TU254910 other upstream 633631 29419376 ~ 29420727 (+) True G188207
TU254892 other upstream 741994 29292741 ~ 29312364 (+) False si:ch211-245h14.1
unassigned_transcript_1091 other downstream 317242 30373666 ~ 30373738 (+) True trnat-ugu_4
TU255132 other downstream 568056 30624480 ~ 30659281 (+) False G188352
XR_005636985.1 other downstream 737795 30794219 ~ 30812143 (+) False LOC120546905
TU255105 other downstream 797551 30853975 ~ 30855364 (+) False G188352
XR_005637052.1 other downstream 1441531 31497955 ~ 31498174 (+) True LOC120547349

Expression Profile