RNA id: XR_005636975.1


Basic Information

Item Value
RNA id XR_005636975.1
length 362
lncRNA type intronic
GC content 0.44
exon number 3
gene id LOC120546875
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 29934594 ~ 29935486 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAGGGTCTGTCTGCTCTAGAAACCAGTCAGGACACGGCTGATCCTGAAGGTTGTGTTTTCTACGCCTCCATCAGCTACACCAAGAAGACCAACAGCAGAGCCCAGGTTCGGTgtaaaaatgatgatgatgcagtGACCTACACAACCGTGAAAGCTTCCTCCGCTGATCCCAGTGACCTCTACGCTACCATCAACTAATCTGTCTAATCTGTCATCAGATATTTGCTAATCTCTGTTAATGTTCATGATCATGTTCAGCATGGATTATTGTAAACAGCTTCCTATTCAGAAGGGCGTGTAGTAGGTTAACTAGTGTTGCAATGTAGAAAGGGGAAGTAGTAGTTCAACATGTATATATGTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU255055 lncRNA upstream 1734 29932550 ~ 29932860 (+) True G188323
XR_005636969.1 lncRNA upstream 45710 29886864 ~ 29888884 (+) True LOC120546868
XR_005636968.1 lncRNA upstream 140915 29787961 ~ 29793679 (+) True LOC120546865
XR_005636962.1 lncRNA upstream 273859 29659256 ~ 29660735 (+) True LOC120546861
TU255008 lncRNA upstream 329495 29579635 ~ 29605099 (+) True G188290
TU255056 lncRNA downstream 4720 29940206 ~ 30032961 (+) False LOC120546873
XR_005636974.1 lncRNA downstream 31484 29966970 ~ 29979067 (+) True LOC120546874
TU255073 lncRNA downstream 91651 30027137 ~ 30027805 (+) True G188333
XR_005636973.1 lncRNA downstream 95414 30030900 ~ 30035201 (+) True LOC120546873
XR_005636972.1 lncRNA downstream 97195 30032681 ~ 30035201 (+) False LOC120546873
XM_039782109.1 mRNA upstream 27900 29895425 ~ 29906694 (+) False LOC120546870
XM_039782111.1 mRNA upstream 27900 29895425 ~ 29906694 (+) False LOC120546870
XM_039782110.1 mRNA upstream 27900 29897460 ~ 29906694 (+) True LOC120546870
XM_039782113.1 mRNA upstream 30061 29895425 ~ 29904533 (+) False LOC120546870
XM_039782100.1 mRNA upstream 51870 29876921 ~ 29882724 (+) True LOC120546867
XM_039781362.1 mRNA downstream 76669 30012155 ~ 30022642 (+) True LOC120546436
XM_039782106.1 mRNA downstream 93464 30028950 ~ 30083063 (+) False LOC120546869
XM_039782101.1 mRNA downstream 137962 30073448 ~ 30083063 (+) False LOC120546869
XM_039782107.1 mRNA downstream 137962 30073448 ~ 30083063 (+) False LOC120546869
XM_039782104.1 mRNA downstream 137962 30073448 ~ 30083063 (+) False LOC120546869
TU255018 other upstream 288771 29645254 ~ 29645823 (+) True G188296
TU254981 other upstream 470720 29461849 ~ 29463874 (+) True G188268
TU254910 other upstream 513867 29419376 ~ 29420727 (+) True G188207
TU254892 other upstream 622230 29292741 ~ 29312364 (+) False si:ch211-245h14.1
unassigned_transcript_1091 other downstream 438180 30373666 ~ 30373738 (+) True trnat-ugu_4
TU255132 other downstream 688994 30624480 ~ 30659281 (+) False G188352
XR_005636985.1 other downstream 858733 30794219 ~ 30812143 (+) False LOC120546905
TU255105 other downstream 918489 30853975 ~ 30855364 (+) False G188352
XR_005637052.1 other downstream 1562469 31497955 ~ 31498174 (+) True LOC120547349

Expression Profile