RNA id: XR_005637012.1


Basic Information

Item Value
RNA id XR_005637012.1
length 1484
lncRNA type inter_gene
GC content 0.45
exon number 3
gene id LOC120547009
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 15257133 ~ 15264717 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTCAGTTGGATTcagaagagagagaaggctGCTGCAGGCTGGAGAGACGTGGTGTTTTCCCACAACACAAACTTTTGTAAATATACCTTTTTTAAAACCTGAACTACACATTGGAGCAGCTGGAGCTGCACCCCCGGGTGTTGGCAGTCTTGACTAAGGAATGCTAGGATGCCGACCTGGAGATTGCTCAAGACGGCGTGGTCATTGAGTCAGTAGGCCCGTCGTGAATAAAACAACTTCGTGGCTCTTCTTCCCTCTGCTTTACTCTGTGCATAGATCAACTGGACGACAAGACACAAAAGAGAGCTACGGTCTGAATTAAAATCAGGGTGCCATTATCTGATGATAAAAGCCATGTCCAGAGGAATGTCACCCATTAACCGTGCCAACTGTCGATGGAGTCAAGAATCCCCTGCATGTTTGTCTGCAACTGACCCGGTCTGAACCCTCCACCATTCCACCAGGCTATCGGCGTGAGTAGGCGAGGAGAGATGGCCACATCGAGGCTGCTAAAAGGCTCGCTCCCAGTGCTGCGTGACGGCTTCCTCCATTCACATCTCTCCTGTTCTTATATCTCTTCGTtctgtttttctcctctttgcttccccctctctctgttaCGCTTGCTGCTGTGTTTCTTCTGTTCGTGCCTTCTCTGTTCTCTCCATGCCTGCTCATAATCTTGTCTTGCAAAAAGGGTTCTTCTTTCTCATTCCTTTTCAGTTTCTTCGTGGACTCTGCAGACCCTCGCTTGCCATTTCAGTTCACTTTCTCAAGCACTTCCGGTGGCCTGGCCTGTTATTTCTCCTTTGAACAAAGAATGCTACTGTTAAAAGACTTCTAAATCAGTATTACTAATCAGTATTTGAGGTGAGAGGTAGTGGATTCCCCTCATTCTGTGCATGCTGGTATGGGTGGTCTGGCTTCCTGGTTCAGAAGCCAATGCAAGATTTGTGTAAAGTGATGTGTTCTCAATCTGAGAAGTGTGGGTCTCAGGCTTTGATGCTAAACCTTCTCTCTTCACTTCCTTCTAGGCATCCGATGATCTAATTAACATACTGTATTATTATCGCCTAACTCACAGCAATTTTAGACTTTGATCCTTGATCCATGTGTGAGCTGTCCTTTTGTCACATACTCTTGGCCAGTTTCTTGGTCTTTTGCTCCCAATACAGATGTTAAACCACATTCTTGTGTGTAAACCTATGGCTACcttattttatttctctctgttaACTAAAGCCGGATCTACTTGGGCCCTGTTTGGGAGAATTCTCCTTCTGAATAGTTTCTTCTTATCAGCTAATAGCCTGCTTCCCTGTCTGCCTCCAGCCTGTGTACCATATGTTATCTTCTATACCAGATCAAATGACATTAGGCTGAAACAATCACGAAAATGTCTCCAACATTTTTCATTCTTAAGTGCTGCATTATTGCTGGCCCCTCAGCTGTCCTCTGTTACAGAGACATAAGTCATGCTCATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249768 lncRNA upstream 54618 15202306 ~ 15202515 (+) True G184431
TU249755 lncRNA upstream 83003 15173690 ~ 15174130 (+) True G184419
TU249709 lncRNA upstream 125362 15129476 ~ 15131771 (+) False hsp90aa1.1
TU249710 lncRNA upstream 145528 15110243 ~ 15111605 (+) False G184389
TU249711 lncRNA upstream 145528 15110243 ~ 15111605 (+) True G184389
TU249801 lncRNA downstream 55301 15320018 ~ 15320239 (+) True G184461
TU249803 lncRNA downstream 57029 15321746 ~ 15322122 (+) True G184463
TU249805 lncRNA downstream 57858 15322575 ~ 15322888 (+) True G184465
TU249814 lncRNA downstream 213774 15478491 ~ 15479080 (+) True G184474
TU249823 lncRNA downstream 228487 15493204 ~ 15493527 (+) True G184481
XM_039782230.1 mRNA upstream 83551 15142703 ~ 15173582 (+) True ppp2r5cb
XM_039782231.1 mRNA upstream 83551 15142703 ~ 15173582 (+) False ppp2r5cb
XM_039782232.1 mRNA upstream 83551 15152400 ~ 15173582 (+) False ppp2r5cb
XM_039782224.1 mRNA upstream 115740 15135367 ~ 15141393 (+) True hsp90aa1.2
XM_039782225.1 mRNA upstream 122273 15130317 ~ 15134860 (+) True hsp90aa1.1
XM_039782031.1 mRNA downstream 12868 15277585 ~ 15286851 (+) True slc25a29
XM_039782032.1 mRNA downstream 18829 15283546 ~ 15286851 (+) False slc25a29
XM_039780985.1 mRNA downstream 24957 15289674 ~ 15293252 (+) True LOC120546207
XM_039780969.1 mRNA downstream 31564 15296281 ~ 15300707 (+) True vrtn
XM_039780970.1 mRNA downstream 31899 15296616 ~ 15300707 (+) False vrtn
TU249525 other upstream 727763 14525136 ~ 14529370 (+) True G184258
TU249487 other upstream 875946 14362341 ~ 14381187 (+) True G184231
XR_005636930.1 other upstream 1135619 14024484 ~ 14121514 (+) False LOC120546742
TU249175 other upstream 2009717 13206308 ~ 13247416 (+) False G183994
TU249176 other upstream 2107055 13145475 ~ 13150078 (+) True G183994
XR_005636833.1 other downstream 24957 15289674 ~ 15293252 (+) False LOC120546207
TU249798 other downstream 37208 15301925 ~ 15318836 (+) True G184458
TU249859 other downstream 395856 15660573 ~ 15663574 (+) True rhov
XR_005636865.1 other downstream 430227 15694944 ~ 15716284 (+) False dpf3
XR_005636866.1 other downstream 430227 15694944 ~ 15716284 (+) False dpf3

Expression Profile