RNA id: XR_005637043.1


Basic Information

Item Value
RNA id XR_005637043.1
length 295
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id LOC120547280
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 26247778 ~ 26249685 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTCATCAGGTGCCGGCATGTCGTTGGAGTACTGAAGAAACTGGGCCACATAAGTCATAATGGACTTCTCATCAGGGTCTCTAACATCCacatctgaggagcagCAGTAACGGATTAAGAATGTTTTGGCACGAGTTTACCATTGACACTCACATGACAGTGGAGGATGATGGTCCATATGAGTCCGAGGATGATGGAGGGCCGTCCATCTATGATATCTGGGATGTTTATATTCACCATTTTGATCTACACCAACCGACCACAACAAATGTTAATAAAAACACGCTGCAGATTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU253943 lncRNA upstream 219856 26006921 ~ 26027922 (+) False nudt14
TU253938 lncRNA upstream 278853 25968206 ~ 25968925 (+) False LOC120546493
TU253941 lncRNA upstream 280478 25967006 ~ 25967300 (+) True G187431
TU253934 lncRNA upstream 312519 25929576 ~ 25935259 (+) False abracl
TU253932 lncRNA upstream 313831 25930048 ~ 25933947 (+) False abracl
TU254021 lncRNA downstream 7810 26257495 ~ 26260894 (+) False atp5mj
TU254024 lncRNA downstream 22683 26272368 ~ 26272595 (+) True G187508
TU254063 lncRNA downstream 65437 26315122 ~ 26315654 (+) True G187535
TU254064 lncRNA downstream 74831 26324516 ~ 26324734 (+) True G187536
TU254075 lncRNA downstream 180884 26430569 ~ 26431271 (+) False tfap2d
XM_039782810.1 mRNA upstream 88342 26139409 ~ 26159436 (+) True esr2a
XM_039782075.1 mRNA upstream 145380 26047472 ~ 26102398 (+) False jag2b
XM_039782074.1 mRNA upstream 145380 26047474 ~ 26102398 (+) True jag2b
XM_039782326.1 mRNA upstream 211546 26006854 ~ 26036232 (+) True nudt14
XM_039781433.1 mRNA upstream 254905 25970398 ~ 25992873 (+) False knl1
XM_039780906.1 mRNA downstream 7790 26257475 ~ 26260895 (+) True atp5mj
XM_039782726.1 mRNA downstream 15504 26265189 ~ 26283008 (+) True gareml
XM_039782617.1 mRNA downstream 48641 26298326 ~ 26310715 (+) True hadhb
XM_039781022.1 mRNA downstream 164006 26413691 ~ 26431397 (+) True tfap2d
XM_039782813.1 mRNA downstream 188801 26438486 ~ 26452365 (+) False tfap2b
TU253978 other upstream 217378 26028060 ~ 26030400 (+) False nudt14
unassigned_transcript_1083 other upstream 1027838 25219868 ~ 25219940 (+) True trnat-ugu_3
TU253601 other upstream 1238371 25004019 ~ 25009407 (+) False lama2
TU253479 other upstream 1739965 24506913 ~ 24507813 (+) True G187094
TU253325 other upstream 2164674 24079603 ~ 24083104 (+) True G186975
TU254022 other downstream 27010 26276695 ~ 26281368 (+) False gareml
TU254081 other downstream 195965 26445650 ~ 26452304 (+) False tfap2b
TU254083 other downstream 195965 26445650 ~ 26452304 (+) False tfap2b
XR_005637060.1 other downstream 407656 26657341 ~ 26657503 (+) True LOC120547357
TU254123 other downstream 433210 26682895 ~ 26685507 (+) True G187574

Expression Profile