RNA id: XR_005637045.1


Basic Information

Item Value
RNA id XR_005637045.1
length 328
lncRNA type inter_gene
GC content 0.41
exon number 3
gene id LOC120547295
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 32228686 ~ 32229327 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CATATCATCTTCATCAGAAGTCAAAGTATTACGAGTTATTGAAATGTGAAGTGAGAGATGATTGCAGTGAAAATGGGCAGCTGTTCAGCTTCATCCCTCCTCAGTCCTCAGGTGAGAAACCAGGTGATGATGCACCAACTACAATATCTCCGACTACAAATAAATCACCAATGACAACAGGAAATAAATGgacatcagaagagacaaacaACATGACATCTGAAAACAACAATCAAACTAAACCAGAAGGCTGGTGGAGGATCATCGTCGTGCCTCTGGGTTTAGCATCACTCATAACAAGTGTTGTGGTGGTCAACATATGGACAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU256062 lncRNA upstream 26133 32202262 ~ 32202553 (+) True G188971
TU256051 lncRNA upstream 85306 32143116 ~ 32143380 (+) True G188960
TU255867 lncRNA upstream 242600 31985312 ~ 31986086 (+) True G188819
TU255866 lncRNA upstream 259745 31968623 ~ 31968941 (+) True G188818
TU255863 lncRNA upstream 276034 31947198 ~ 31952652 (+) True G188816
TU256071 lncRNA downstream 9156 32238483 ~ 32238824 (+) True G188980
TU256084 lncRNA downstream 86973 32316300 ~ 32319175 (+) True G188987
TU256125 lncRNA downstream 212956 32442283 ~ 32442619 (+) True G189011
TU256127 lncRNA downstream 214311 32443638 ~ 32447139 (+) True G189012
TU256130 lncRNA downstream 225371 32454698 ~ 32456243 (+) True G189013
XM_039782818.1 mRNA upstream 82776 32111590 ~ 32145910 (+) True cd109
XM_039782828.1 mRNA upstream 123026 32093951 ~ 32105660 (+) True crnkl1
XM_039782187.1 mRNA upstream 343884 31881465 ~ 31884802 (+) True nkx2.4b
XM_039782188.1 mRNA upstream 343884 31881465 ~ 31884802 (+) False nkx2.4b
XM_039782525.1 mRNA upstream 359390 31866894 ~ 31869296 (+) False nkx2.2b
XM_039782844.1 mRNA downstream 306408 32535735 ~ 32569277 (+) True senp6a
XM_039782846.1 mRNA downstream 306408 32535735 ~ 32569277 (+) False senp6a
XM_039781369.1 mRNA downstream 347129 32576456 ~ 32767003 (+) True myo6a
XM_039780909.1 mRNA downstream 736870 32966197 ~ 33041169 (+) False mei4
XM_039780908.1 mRNA downstream 746627 32975954 ~ 33041169 (+) True mei4
TU255816 other upstream 447648 31777029 ~ 31781038 (+) False LOC120546196
TU255785 other upstream 618585 31606054 ~ 31610101 (+) False LOC120546816
XR_005637055.1 other upstream 724458 31504009 ~ 31504228 (+) True LOC120547352
XR_005637054.1 other upstream 727632 31500835 ~ 31501054 (+) True LOC120547351
XR_005637053.1 other upstream 729358 31499109 ~ 31499328 (+) True LOC120547350
TU256147 other downstream 347151 32576478 ~ 32622264 (+) False myo6a
TU256417 other downstream 1098776 33328103 ~ 33331713 (+) False pex7
TU256470 other downstream 1224669 33453996 ~ 33458768 (+) True G189269
TU256525 other downstream 1412293 33641620 ~ 33685556 (+) True G189309
XR_005637066.1 other downstream 1534138 33763465 ~ 33763626 (+) True LOC120547364

Expression Profile