RNA id: XR_005637063.1


Basic Information

Item Value
RNA id XR_005637063.1
length 139
RNA type snoRNA
GC content 0.58
exon number 1
gene id LOC120547361
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 34524888 ~ 34525026 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCTGTGATGATGAGAAGCGCAGGGGTACGGACCTCAGCCAATGATGGTGGCTGAGTGCTGCTGCGGGCGTTCTGATTGGAGGACGAGTGGTCCACTGTCAGAACCACAGCAGCACGAGACAGACGCTCTCCTGAACAGA

Function

GO: NA

KEGG:

id description
ko00030 Pentose phosphate pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU256881 lncRNA upstream 7032 34461669 ~ 34517856 (+) True G189550
TU256886 lncRNA upstream 21345 34433979 ~ 34503543 (+) True G189553
TU256879 lncRNA downstream 17641 34542667 ~ 34562894 (+) True G189548
TU256927 lncRNA downstream 19459 34544485 ~ 34546167 (+) True G189575
TU256928 lncRNA downstream 31772 34556798 ~ 34557154 (+) True G189576
TU256933 lncRNA downstream 52291 34577317 ~ 34582503 (+) True G189579
TU256934 lncRNA downstream 60997 34586023 ~ 34676086 (+) True G189580
XM_039781380.1 mRNA upstream 71093 34378500 ~ 34453795 (+) True LOC120546451
XM_039781728.1 mRNA upstream 151386 34360125 ~ 34373502 (+) False LOC120546638
XM_039781382.1 mRNA downstream 6362 34531388 ~ 34540087 (+) True LOC120546454
XM_039781801.1 mRNA downstream 34906 34559932 ~ 34571848 (+) True LOC120546680
XM_039781383.1 mRNA downstream 59021 34584047 ~ 34595606 (+) True LOC120546456
XM_039781793.1 mRNA downstream 97030 34622056 ~ 34624173 (+) True LOC120546672
XM_039781765.1 mRNA downstream 102452 34627478 ~ 34630935 (+) True LOC120546652
XR_005637062.1 other upstream 5462 34519288 ~ 34519426 (+) True LOC120547360
TU256872 other upstream 21133 34482864 ~ 34503755 (+) True G189541
TU256921 other upstream 37711 34486424 ~ 34487177 (+) True G189570
TU256875 other upstream 59991 34462908 ~ 34464897 (+) True G189544
TU256520 other upstream 538412 33965583 ~ 33986476 (+) True G189305
TU256925 other downstream 6491 34531517 ~ 34538625 (+) False LOC120546454
TU256926 other downstream 6491 34531517 ~ 34585439 (+) False LOC120546454
TU256876 other downstream 24343 34549369 ~ 34552365 (+) True G189545
TU256929 other downstream 39759 34564785 ~ 34610483 (+) True G189577
XR_005637064.1 other downstream 40443 34565469 ~ 34565607 (+) True LOC120547362

Expression Profile