RNA id: unassigned_transcript_1014



Basic Information


Item Value
RNA id unassigned_transcript_1014
length 73
RNA type tRNA
GC content 0.49
exon number 1
gene id trnav-aac_21
representative True

Chromosome Information


Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 4155760 ~ 4155832 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


GTTTCCGTAGTGTAGTGGTTATCACGTTTGCCTAACACGCAAAAGGTCCCCTGTTCGAAACAGGGCggaaaca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU246774 lncRNA downstream 52188 4102775 ~ 4103572 (-) True G182105
TU246768 lncRNA downstream 63130 4092423 ~ 4092630 (-) True G182099
TU246684 lncRNA downstream 286061 3867864 ~ 3869699 (-) True G182028
TU246683 lncRNA downstream 289400 3866017 ~ 3866360 (-) True G182027
TU246674 lncRNA downstream 324363 3830750 ~ 3831397 (-) True G182018
XR_005637042.1 lncRNA upstream 1859 4157691 ~ 4162110 (-) True LOC120547275
TU246823 lncRNA upstream 128128 4283960 ~ 4284159 (-) True G182137
TU246841 lncRNA upstream 238741 4394573 ~ 4395005 (-) True G182155
TU246842 lncRNA upstream 248193 4404025 ~ 4404267 (-) True G182156
TU246869 lncRNA upstream 372184 4528016 ~ 4529058 (-) True G182182
XM_039782877.1 mRNA downstream 262585 3891637 ~ 3893175 (-) True srp9
XM_039782383.1 mRNA downstream 265110 3884965 ~ 3890650 (-) True ephx1
XM_039782384.1 mRNA downstream 271147 3875160 ~ 3884613 (-) True LOC120547034
XM_039782431.1 mRNA downstream 348045 3773170 ~ 3807715 (-) False ankrd6b
XM_039782648.1 mRNA upstream 21741 4177573 ~ 4184958 (-) True LOC120547172
XM_039782653.1 mRNA upstream 39311 4195143 ~ 4196360 (-) True LOC120547177
XM_039782615.1 mRNA upstream 204370 4360202 ~ 4400599 (-) True LOC120547149
XM_039782345.1 mRNA upstream 252156 4407988 ~ 4475102 (-) True ube2j1
XM_039782655.1 mRNA upstream 324997 4480829 ~ 4485479 (-) True LOC120547180
unassigned_transcript_1013 other downstream 6782 4148907 ~ 4148978 (-) True trnav-aac_20
TU246771 other downstream 55280 4100010 ~ 4100480 (-) True G182102
TU246722 other downstream 241745 3908547 ~ 3914015 (-) True G182059
TU246726 other downstream 243481 3906617 ~ 3912279 (-) True G182061
TU246718 other downstream 262601 3891642 ~ 3893159 (-) False srp9
unassigned_transcript_1016 other upstream 2204 4158036 ~ 4158108 (-) True trnav-aac_22
unassigned_transcript_1018 other upstream 4490 4160322 ~ 4160394 (-) True trnav-aac_23
unassigned_transcript_1020 other upstream 6779 4162611 ~ 4162683 (-) True trnav-aac_24
TU246795 other upstream 7526 4163358 ~ 4165996 (-) True G182121
TU246801 other upstream 7526 4163358 ~ 4165996 (-) False G182121