RNA id: unassigned_transcript_1085


Basic Information

Item Value
RNA id unassigned_transcript_1085
length 73
RNA type tRNA
GC content 0.59
exon number 1
gene id trnaa-agc_21
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 26880161 ~ 26880233 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGGGgattagctcaaatggtagagcgCTCGCTTAGCATGCGAGAGGTAGCGGGATCGATGCCCGCATCCTCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254075 lncRNA upstream 448890 26430569 ~ 26431271 (+) False tfap2d
TU254064 lncRNA upstream 555427 26324516 ~ 26324734 (+) True G187536
TU254063 lncRNA upstream 564507 26315122 ~ 26315654 (+) True G187535
TU254024 lncRNA upstream 607566 26272368 ~ 26272595 (+) True G187508
TU254021 lncRNA upstream 619267 26257495 ~ 26260894 (+) False atp5mj
XR_005636870.1 lncRNA downstream 488 26880721 ~ 26885536 (+) False LOC120546372
XR_005636871.1 lncRNA downstream 488 26880721 ~ 26885536 (+) False LOC120546372
TU254247 lncRNA downstream 7474 26887707 ~ 26888304 (+) True G187672
TU254272 lncRNA downstream 36459 26916692 ~ 26918285 (+) True G187692
TU254273 lncRNA downstream 41650 26921883 ~ 26922238 (+) True G187693
XM_039781299.1 mRNA upstream 1583 26860070 ~ 26878578 (+) True tmem214
XM_039781614.1 mRNA upstream 23268 26843772 ~ 26856893 (+) False LOC120546589
XM_039781302.1 mRNA downstream 16147 26896380 ~ 26905243 (+) True esco2
XM_039780992.1 mRNA downstream 147872 27028105 ~ 27036677 (+) False LOC120546215
XM_039782373.1 mRNA downstream 192737 27072970 ~ 27407359 (+) True LOC120547023
XM_039781427.1 mRNA downstream 592983 27473216 ~ 27478075 (+) True c18h1orf131
XM_039781428.1 mRNA downstream 592983 27473216 ~ 27478075 (+) False c18h1orf131
unassigned_transcript_1084 other upstream 540 26879533 ~ 26879621 (+) True trnay-gua_55
XR_005636892.1 other upstream 152616 26695430 ~ 26727545 (+) False LOC120546586
unassigned_transcript_1086 other downstream 6901 26887134 ~ 26887206 (+) True trnaa-agc_22
unassigned_transcript_1087 other downstream 10051 26890284 ~ 26890356 (+) True trnaa-agc_23
unassigned_transcript_1088 other downstream 101488 26981721 ~ 26981793 (+) True trnat-cgu_2
TU254572 other downstream 1759221 28639454 ~ 28649123 (+) False afdna
TU254581 other downstream 1759221 28639454 ~ 28649123 (+) False afdna