RNA id: unassigned_transcript_997


Basic Information

Item Value
RNA id unassigned_transcript_997
length 74
RNA type tRNA
GC content 0.51
exon number 1
gene id trnaf-aaa_1
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 828794 ~ 828867 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTTTCCGTGAGTGTAGTGGTTATCGCGTTTGCCTAAACCGCAAAAGGTCCCCTGTTCGAAACAGGGCggaaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU245778 lncRNA upstream 148531 679416 ~ 680263 (+) True G181305
TU245771 lncRNA upstream 175994 652514 ~ 652800 (+) True G181298
TU245759 lncRNA upstream 191416 636983 ~ 637378 (+) True G181286
TU245757 lncRNA upstream 200742 627291 ~ 628052 (+) True G181284
TU245730 lncRNA upstream 228857 599696 ~ 599937 (+) True G181261
XR_005636820.1 lncRNA downstream 36815 865682 ~ 867699 (+) True LOC120546155
TU245840 lncRNA downstream 51612 880479 ~ 880898 (+) True G181347
TU245854 lncRNA downstream 74895 903762 ~ 905192 (+) True G181357
TU245858 lncRNA downstream 86921 915788 ~ 959465 (+) True G181360
TU245949 lncRNA downstream 317569 1146436 ~ 1146690 (+) True G181431
XM_039781160.1 mRNA upstream 178421 649298 ~ 650373 (+) True LOC120546301
XM_039781141.1 mRNA upstream 299147 510134 ~ 529647 (+) True hsf2
XM_039781142.1 mRNA upstream 299147 510138 ~ 529647 (+) False hsf2
XM_039781149.1 mRNA upstream 563108 258222 ~ 265686 (+) True gja1b
XM_039782631.1 mRNA downstream 42214 871081 ~ 896358 (+) True LOC120547162
XM_039781869.1 mRNA downstream 80304 909171 ~ 928036 (+) True ppil4
XM_039781414.1 mRNA downstream 112984 941851 ~ 956304 (+) True LOC120546482
XM_039782292.1 mRNA downstream 298648 1127515 ~ 1141921 (+) True amd1
XM_039782771.1 mRNA downstream 339215 1168082 ~ 1181768 (+) True rpf2
unassigned_transcript_995 other upstream 2867 825855 ~ 825927 (+) True trnav-cac_11
unassigned_transcript_994 other upstream 4396 824326 ~ 824398 (+) True trnav-cac_10
unassigned_transcript_993 other upstream 5922 822800 ~ 822872 (+) True trnav-cac_9
unassigned_transcript_992 other upstream 610648 218075 ~ 218146 (+) True trnam-cau_53
unassigned_transcript_991 other upstream 612189 216523 ~ 216605 (+) True trnal-uag_18
unassigned_transcript_998 other downstream 2832 831699 ~ 831772 (+) True trnav-aac_13
unassigned_transcript_999 other downstream 5738 834605 ~ 834677 (+) True trnav-aac_14
unassigned_transcript_1001 other downstream 8640 837507 ~ 837579 (+) True trnav-aac_15
unassigned_transcript_1003 other downstream 13418 842285 ~ 842357 (+) True trnav-aac_16
unassigned_transcript_1004 other downstream 16323 845190 ~ 845262 (+) True trnav-aac_17