RNA id: TU265830


Basic Information

Item Value
RNA id TU265830
length 1526
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G195783
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 22142225 ~ 22144422 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

caataataaaatattaaaccTATATGCATTAACCACATGGACACATTCATTTAAGTTCACATACTATTTTAATtgccatttcatttaaaaacagtGTGTGGTTACCACACTTATTAGTTATTTGCTTGGTTTAGTAGCGCCGATAAaagttaatacatttttatattgctTTACTCTATAGGTTAGTCTGAAACACAGACTTTCAAAAGTTATTCAATGTAGCAGTGAAGTAGCATAGGCAGAAAATCTACTTTTGTTTCGTATACAGGAATACATATGACTCTGTATGACGGTTATTCAGCAAACAATGCTAAGACTAAAGATTTCCCACGTGGTTCTCTTTCTAGCATGTCTCCTTCAGCAGCTGGATTTCATTAAGCCAAGGGCGGCTCCACACTGTAAATGTGCACTGGTAAGGCTGAGGAAGAAAAagttacacacattatatatatatatatataaacatatcaaaaataaaacagcacatAGCATTTAATGTGTGAGATTATCATAGTCAAAGaaagagctgggcaatatataaataatatattgatatcgtgatatgagactagatatcgtcttagattttggatatcgtaatatgacgtaagtggtgtcttttcctggttttaaaggctgcattacagtaaagtgatgtcattttatgaacacaccagactgttctagctgttctattatttgcatttacccacttagtcattatatccacattactgaagattatttatcaaaaatctcattgtgtaaatattttgtgaaagcaccagtagtcaacactacaatatcattgcggtatcgatatcgaggtatttggtcaaaaatattgtgatatttgattttctccatatagTCAAAGATCAACATAgaattttttctgtttttaagagGGCATGATGAACTTAATGTCCTCACTTAAAGCATTgtaaaagctttaaaaacagCTTTGCTAGCTAGTTCCCCTTGCTTCACGCTGCTCTGTCTAATTCCATCTTCCTTTAACAAACAAAGCTTGATTGTTCAAAAtgggaaaatatatatttgtttcacAATGTGACAGTTTGCGGTCTACTGTTGAAGAGAGAAGTATAAGTCTTCTGTATGATGTTTAATAATAACTCCCAATAGCTAAATCGAATGGGGATTTTTCCTTCCAGAAGCTGAGGTTGTAGCCTCTAAATAAAGTTATTACCCGAGCCATTTCTGGGTCTTGGTGGATGCCGCACACTTCATTTTCACTGCCCTTTCTGCAGGGGGTCTTCGCCATTCTCACAGTTATGACGTACTTCATGCCAGCAACCACCTGCTCTGAGCCTTGACCACTTCTGCCACTTGGCTGAGGTACAGGTCGTTGCTGCCCCTGTTGTGTTGGACGACGGCGTAGTTGAGGGCATTACGCATATCTTCGTTATTGATATCTACGTCGGAAAACCCCCCTACAAATCCTCCTAACCCGACGGCGAAAACGGCCGCAAGAACAGGGAAGACAATCTTCCACATCATGTTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU265814 lncRNA upstream 15937 22125550 ~ 22126288 (+) True G195771
TU265797 lncRNA upstream 58485 22081129 ~ 22083740 (+) True G195757
TU265785 lncRNA upstream 85432 22052531 ~ 22056793 (+) True G195749
TU265743 lncRNA upstream 92413 21965685 ~ 22049812 (+) False G195711
TU265742 lncRNA upstream 170815 21965685 ~ 21971410 (+) True G195711
TU265978 lncRNA downstream 1881 22146303 ~ 22146792 (+) True G195881
TU265981 lncRNA downstream 10980 22155402 ~ 22155895 (+) False kif16bb
TU266002 lncRNA downstream 66720 22211142 ~ 22249845 (+) False LOC120547767
XR_005637106.1 lncRNA downstream 91341 22235763 ~ 22237333 (+) False LOC120547767
XR_005637105.1 lncRNA downstream 91361 22235783 ~ 22237333 (+) True LOC120547767
XM_039783871.1 mRNA upstream 8705 22131121 ~ 22133520 (+) True mgme1
XM_039783749.1 mRNA upstream 40358 22099306 ~ 22101867 (+) True cfl1l
XM_039783032.1 mRNA upstream 48002 22088107 ~ 22094223 (+) False LOC120547561
XM_039783031.1 mRNA upstream 48002 22088108 ~ 22094223 (+) True LOC120547561
XM_039783081.1 mRNA upstream 69309 22071087 ~ 22072916 (+) True mrpl14
XM_039784015.1 mRNA downstream 5526 22149948 ~ 22153326 (+) True ephx5
XM_039784014.1 mRNA downstream 11436 22155858 ~ 22184492 (+) True kif16bb
XM_039783423.1 mRNA downstream 408584 22553006 ~ 22563704 (+) True flrt3
XM_039783857.1 mRNA downstream 503492 22647914 ~ 22692604 (+) True tasp1
XM_039783859.1 mRNA downstream 503492 22647914 ~ 22677722 (+) False tasp1
TU265655 other upstream 627097 21514526 ~ 21515128 (+) True G195653
XR_005637114.1 other upstream 810938 21318610 ~ 21331287 (+) False fbxo11a
TU265472 other upstream 1388416 20752773 ~ 20753809 (+) True G195518
TU265393 other upstream 1611910 20529767 ~ 20530315 (+) True G195448
unassigned_transcript_1121 other upstream 1763942 20378212 ~ 20378283 (+) True trnaw-cca_26
XR_005637123.1 other downstream 503492 22647914 ~ 22669467 (+) False tasp1
XR_005637111.1 other downstream 1417861 23562283 ~ 23605574 (+) False disc1
XR_005637109.1 other downstream 2213504 24357926 ~ 24367599 (+) True LOC120547848
TU266740 other downstream 2420128 24564550 ~ 24569167 (+) True G196439
TU266801 other downstream 2864090 25008512 ~ 25010761 (+) False dact2

Expression Profile