RNA id: XM_039783857.1


Basic Information

Item Value
RNA id XM_039783857.1
length 2415
RNA type mRNA
GC content 0.46
exon number 15
gene id tasp1
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 22647914 ~ 22692604 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAAGTACTTTTTGTATGCTCTAGCTCCTAGCTGCGGTTAGCACGGTTAGCACAGAGGAGTGAAAGTGACTGACAGCAAAGTTTGTCTCGGTTAGATTTATGAGTCCATCTACCGTTCATGTTTGTATTTAACACATGTCAGGTAACGTCGTGCTTAGCAGGCAGTTCTGTCGCTGGAGATGAGTGAAAATTGTGTGCCATGAAAATGATTTTCTTACCACTGTCTGATAGGCCATGATAGGCTTATCAAGTTATGCAGGGGTTATGGAAAGTCTAATGAATTCTGCTGAAGAGCAGCAACCCTCCTCTCCCCTGGCTAACTCATGGTCCAAAATACAGGAATCAAGCAAGAATCAAAAGCCAAAATGTGTTGGTGGATTTGTTTTAGTTCATGCAGGAGCAGGATACCATTCTGAATCTAAAGCCAAGGAGTACAAGCATGTGTGCAAAAGAGCCTGCCAGCGaGCTGTGGACCGACTCAAAGCCGGGGCACTTGCAGTGGAAGCAGTGGCCGCAGCATTGGTTGAACTTGAGGACTCTCCTTTTACAAACGCTGGCATGGGCTCCAACCTTAATCTGTCAGGGGAAATTGAATGTGATGCGAGTATCATGGATGGGAAGTCGCTGCATTATGGTGCTGTAGGGGCTATAAGTGGTATTAAGAACCCAGTCTTGGTTGCAAACCGTCTACTGAGTGAAGCACAGAAAGGGAAACTATCAGCTGGCAGAATACCACCCTGctTTTTAGTGGGGCGAGGAGCACATGATTGGGCAGTCAGCCATGGAATACCACCATGTCCTTCAGAGAAAATGGCCAGCAAGTTTAGTTTATCTGCGTACAAGAGGAACAAGCGAAAGATGGAGCTGGCAGAAAAAATTGACACAGGACATAATCACACGAAGAAAAGACGACAATCAAGTGAAAATGAAAATGGTTCAGGGTGCCTCGACACAGTGGGAGCCGTTGTGATAGACCTGGAAGGGAATGTAGCTGCAGCGGTGTCCAGTGGAGGTCTGGCCATGAAACATCCCGGCAGGGTTGGCCAGGCTGCTCATTATGGATGTGGCTGCTGGGCTGAAAATGCCTGTAGTATGAACTCTCACTCTACAGCAGTGAGTACCTCAGgcTGTGGAGAGCATCTGATTCGCACCATGCTGGCACGGGAATGCTCTGCTGCCATGCAGTCTGAAGATGCCCATCAAGCACTGCTGGAGGCTATGCAAAACAAGTTCATCAGCTCACCCTTTCTGGCCGGTGAAGATCGTGTTTTGGGTGGAGTAATTGTCTTGCGCTGCTGCAGATGTGTGGAACCTCCGCcgtcacaaaatattcagggtATACTGGtGGAGTTTCTATGGAGTCACACCACAGAGAGCATGTGTGTTGGCTACATGTCTGCCCAAGATAGCAAAGCAAAGACACACATATCCAGATTACCCCCTGGGACCGTTCCTGGACAGTGCTTGGCCATCGAAGGAGGTGCACGGAGCCACATCCTGTCATTTGTGTTCCTGTGAATGGCATTTTAAATATGACACCTTGGAATCACAATACACCCCCTGGGCCGTGACAAGCCTGGCTGAAAGATGACATCACCGTCTTCAGTGGCGGACCAGTGAAGCATATCCGCACATAGTCGGAGCTTTCATGGgcaaatgaaaaacaacacattcagCGCTTTTCTCTACATGTGGCATGAGTGGCAATGTTGGGCTCTTTCATCACAAGCCAGAATCTCTATGTAAATGTGAACTAGTGACAAAAGGGATGTTGGAGTTGGAATGGGTGGCATGTGTTTAGTATTTTTGCTGCATGTCCTCAGGAGAAACTCCCTCCTGGTCCTCATCCTGTTCGTTCAATCCAACATTTGGCTGTGTGACAAATATTCGATAAATTCCTGGAATATTTCTTCGGCTTTGCATGCCCTAATATCCAACCGAACACAGGCTTGCTCTTGCATATACACAGGCAGGTCTACAGTGATAGTGGAGATAAGAGAAATTACCCTCACCATCCCCTTGTTGAAGTAAAAATTATTTCCATTAATTTCCCCCAAAGCCCTTATAAAGAATTTATGAAGGGACACCATTCCAGTGGGAATAAATCCATTTATCACTGGGACATGACAAAAATATTTCAGCAGCATGCTAAATATACATcaaaaagcagctgaaggaTGCTTAACACTCTAAAAAAGCATGTCTTAAACCCCGAGTCAGTATTTGAGGCGCTCGTGGAGTCAGTGTGCTTTATGCCGATGTTAAAATGGGCAGTTAAACTGTAGAACCTGTCTTAAGTGGTGTCATGTTGACAAATGTCTCCCTCTTGAAATGTTGTTGAGGTATGTTCTAAACTGGACCACAACCCAAAAAGGTGTCATTAAAAACAGACATCAATGTCAAAAGATTtcaaaaa

Function

GO: NA

KEGG:

id description
K08657 TASP1; taspase, threonine aspartase, 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU266018 lncRNA upstream 6990 22635738 ~ 22640924 (+) True G195915
TU266002 lncRNA upstream 398069 22211142 ~ 22249845 (+) False LOC120547767
XR_005637106.1 lncRNA upstream 410581 22235763 ~ 22237333 (+) False LOC120547767
XR_005637105.1 lncRNA upstream 410581 22235783 ~ 22237333 (+) True LOC120547767
TU265981 lncRNA upstream 492019 22155402 ~ 22155895 (+) False kif16bb
TU266046 lncRNA downstream 16332 22708936 ~ 22709573 (+) True G195941
XR_005637110.1 lncRNA downstream 30423 22723027 ~ 22766653 (+) True LOC120547852
TU266076 lncRNA downstream 161934 22854538 ~ 22921009 (+) True G195965
TU266075 lncRNA downstream 228571 22921175 ~ 22921899 (+) True G195964
TU266079 lncRNA downstream 230172 22922776 ~ 22924662 (+) True G195968
XM_039783423.1 mRNA upstream 84210 22553006 ~ 22563704 (+) True flrt3
XM_039784014.1 mRNA upstream 463422 22155858 ~ 22184492 (+) True kif16bb
XM_039784015.1 mRNA upstream 494588 22149948 ~ 22153326 (+) True ephx5
XM_039783871.1 mRNA upstream 514394 22131121 ~ 22133520 (+) True mgme1
XM_039783749.1 mRNA upstream 546047 22099306 ~ 22101867 (+) True cfl1l
XM_039784018.1 mRNA downstream 202227 22894831 ~ 22920312 (+) True jag1b
XM_039783482.1 mRNA downstream 266705 22959309 ~ 22963954 (+) True mkks
XM_039784616.1 mRNA downstream 285548 22978152 ~ 22982603 (+) True spast
XM_039784617.1 mRNA downstream 285548 22978152 ~ 22982603 (+) False spast
XM_039783038.1 mRNA downstream 309400 23002004 ~ 23009219 (+) True LOC120547567
TU265655 other upstream 1132786 21514526 ~ 21515128 (+) True G195653
XR_005637114.1 other upstream 1316627 21318610 ~ 21331287 (+) False fbxo11a
TU265472 other upstream 1894105 20752773 ~ 20753809 (+) True G195518
TU265393 other upstream 2117599 20529767 ~ 20530315 (+) True G195448
unassigned_transcript_1121 other upstream 2269631 20378212 ~ 20378283 (+) True trnaw-cca_26
XR_005637111.1 other downstream 869679 23562283 ~ 23605574 (+) False disc1
XR_005637109.1 other downstream 1665322 24357926 ~ 24367599 (+) True LOC120547848
TU266740 other downstream 1871946 24564550 ~ 24569167 (+) True G196439
TU266801 other downstream 2315908 25008512 ~ 25010761 (+) False dact2
TU267128 other downstream 2920803 25613407 ~ 25620675 (+) True prdx3

Expression Profile