RNA id: TU266788


Basic Information

Item Value
RNA id TU266788
length 1831
lncRNA type sense_over
GC content 0.41
exon number 2
gene id G196481
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 24873802 ~ 24913468 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

acagacacacacacacacacccacacacacacacacacacacacacacacacacacacacacacacacacaaaacacaaatactCAACCATAAGACCTTAGTTTAGTCATATATCtaattaagaagaaaaaaaacatacaaacaaaatacCCTGTCCTTTACACCTGCTACACATCATTTGGAGATGATTTCCACTGAGCACCTGCTATACACATTTTAAGTCAATATGACAAAATCACCAGTGGTTTCTCACGATCACTCACAACCAAATAAAAGCAAGATGACAATCATTTCCAATCACTTCTCATTTTCTCTCAATCTACCTtgatatgatttattttaacatttcatgccattccatattttttttacttattaacAGCCCATTGCACGCACAAACAAATAGGAATGACCACTAATATACACATCTTATCAATTAAATCACGACACatgaaaacagaacaaaaaggaTGAAAAATAACAGTGTTGAGGTGGAAGTGATATAACTGTTGCCAGTTTTATGATGCTGTTTTCTAATTAAGAATCCGTTAGGATACATTCAAGAGTAAAACAATAAACATTGTTTAATTATTTAACTGCACGTGAGCATGAATGACATAAATGAACaacttatcaaaaataatcaacagttttttttttcttctaaatacttttaaatatttgaacatatttcaGGCCACTAGTGCTGCGTTCTGAgtagaggaaggaaggagcGTATTTAAAGCAGCAGGGCTGACAGTAACTGAGGTAGCAAAGCAGTAAGAGAAAAGAAGCTGAGGCCATGTGGAATTGATACCGAGGAACAGTGTAATGCCATAAAAACAAATTACTCTCAACTTGTACAAGAATATTGACCCTACTTTGGTATAATGCTATTTGATCACTTTATTACAATGAGAGGGACGAGAGAGAGGCTTTGGTCGCTTTCACACCTGTGGTTCAGTTCAAAGAAATTATAAAATATGTATCACTGTGACAGCTTGTTGCTATGCAGGACGCAAGCAACACACACTTCTGTTTAAACCCTTTTTCACCATCTGATGTGTGACGTAATATCCCTGCGCTGACGGGCATACCATGCTACCATGGCTACCAAATGATCTTGTGTCATGATATGGGGCATTGTTTCTATGACAGTTCCAACAACCAGCAAATGGATTGTGTCAAAAGTTTAAAGTTCAAACTCATTGTCATACATTTTCTATCGCATAATCCTGAGGTTGGTCTGCTTTGAGTTCACGCCACAAACGAGCCGCACCAGAGTTAGAGCGCAGTTCTCTGGTCCGCAAAAGGGTTTGAATTACACACCGGCTTAACTGAACCaaaacaagcaaataaatccACCACAGTTCGTCTGAAATGCACCAAGCAAGTTACAGTTAACATGCCACCCCTGCATATATGGCGGGACCCCCACCCTCAACACTGGATTCTTCTCTAGCAGCCAGCACCTGTTGGTCCATGAGTGATTATCAGCAGTGTGTAGATGGAACATCACACATAAACCCAGCCCCCGCCACAACACAAGTGTGCACAAGCAAAAGTTTGCCTTTGGCCCCCAGCTGTTGTTGCAGGTGGAAATagtttttgaataaaaaaacgccGTCCGTTCCCTCCTGCGGTCCAGACAACGTACAGACGACAATCCCAGCAGAGGTTATTGTGAGACAGCTGATAAGGTCAACATCGCTctggagacagaaagaagaggaagagagttgCAGGACTGTTTCCAGGTCAGCAGTTAGAGCGATGAATGAAGTCCCAACCCACTTTAAACCTGCAGGAAGTCTGGGGACTCAAGGATGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU266782 lncRNA upstream 26112 24847114 ~ 24847690 (+) True G196476
TU266781 lncRNA upstream 29950 24843443 ~ 24843852 (+) True G196475
TU266762 lncRNA upstream 231745 24641158 ~ 24642057 (+) False G196457
TU266759 lncRNA upstream 231926 24640699 ~ 24641876 (+) True G196457
TU266761 lncRNA upstream 231926 24641158 ~ 24641876 (+) False G196457
TU266792 lncRNA downstream 34370 24947838 ~ 24949032 (+) True G196485
TU266850 lncRNA downstream 197927 25111395 ~ 25113349 (+) True LOC120547601
TU266852 lncRNA downstream 197927 25111395 ~ 25117367 (+) False LOC120547601
TU266845 lncRNA downstream 199552 25113020 ~ 25117367 (+) False LOC120547601
TU266848 lncRNA downstream 199552 25113020 ~ 25117367 (+) False LOC120547601
XM_039784773.1 mRNA upstream 33055 24742926 ~ 24840747 (+) True LOC120548496
XM_039783728.1 mRNA upstream 379399 24454870 ~ 24494403 (+) True fgfr2
XM_039783126.1 mRNA downstream 41244 24954712 ~ 24976820 (+) True smoc2
XM_039783128.1 mRNA downstream 41244 24954712 ~ 24976820 (+) False smoc2
XM_039783129.1 mRNA downstream 41244 24954712 ~ 24976820 (+) False smoc2
XM_039783127.1 mRNA downstream 41245 24954713 ~ 24976820 (+) False smoc2
XM_039783130.1 mRNA downstream 41245 24954713 ~ 24976820 (+) False smoc2
TU266740 other upstream 304635 24564550 ~ 24569167 (+) True G196439
XR_005637109.1 other upstream 506203 24357926 ~ 24367599 (+) True LOC120547848
XR_005637111.1 other upstream 1268228 23562283 ~ 23605574 (+) False disc1
XR_005637123.1 other upstream 2204335 22647914 ~ 22669467 (+) False tasp1
TU265655 other upstream 3358674 21514526 ~ 21515128 (+) True G195653
TU266801 other downstream 95044 25008512 ~ 25010761 (+) False dact2
TU267128 other downstream 699939 25613407 ~ 25620675 (+) True prdx3
XR_005637133.1 other downstream 903783 25817251 ~ 25824677 (+) False LOC120548053
unassigned_transcript_1122 other downstream 1069277 25982745 ~ 25982838 (+) True trnai-uau_2
TU267544 other downstream 1749691 26663159 ~ 26663785 (+) True G197053

Expression Profile