RNA id: XM_039784767.1


Basic Information

Item Value
RNA id XM_039784767.1
length 2777
RNA type mRNA
GC content 0.42
exon number 8
gene id cacul1
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 25139047 ~ 25144254 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGATTTCTCTCAGCTGTCCGGTTATACGACGTGTCGTAAAATCCAGTTAACAGCAAAAACGAGATGGACACCACCAAAGACgactgacagtttttttttgacTTTATCCCTAATAGTTATCTGAAATGTTTATGTAGTGGCGCCAGGCTTCAGCTCACAGAAGCGGTTGTGAAAATGGAAGCCATGGAAGATGACAGTTTGGATATAAAAGACGACCATAACCACAACTATTGTGcgagcagcagtagtagtagtagtagtagtggtagtagtagtaaagTCCGCACCTATCTGAGAAGCCAGTTGTCGGTTGTAACAACTGTCCCGCAACCTGCCGGTCCACCGGTGCCGGGTGGAGAACCGGGGACTCGACGAGGGAAACTGTGGTCCGGCAGCACCGGGGGGTCAAAGTTAATGGACTCGGATTCAGGCAGCGAGAGCAGCGAAGTCAGCGAGACTGACTGCACGGCTCCGCCACCCTCTGTTGAGGGAAATCTCCCCCTCGATTCTAACGTTACTTCCAAGTTCCTTCTGAATGCAATGGCTGTAGAAGACTACCGGAAAAACCACTGGCCAAACCTGGAGAAGGCAATTGACCGTCTTCTGATTCAGAATCCCACGGACCACATCTCTGTTTCTTATGCACAGATATACAGTTACGTCTACAAGTGTGTTTGTCAGCAGCACTCAGAGCTGCTCTACAATGATTTgacattaaaaataacaaaccaCCTGGAACAGGTTTCCACCCATCTACAAGCCAGACCACCCGAGGACTTCATTGAGAACTTTAATGTTGCGCTGACCCAATACACAGCTTCCCTTCAATGTATAGTTCCTGTATTTATGTACTTGAACAAGTTCTACATCGAGTCGAAGCTGAACAGAGACCTAAGAGAGGACCTGATGAAGCTGTTTGCTGATCACGTCGCAGAAATACATGTGAACACACTGATGCctcttcttatcaaagcTCATTCCATGCCGTTTCAAGTGCAGCCATCTACAATGGCCAGTGTGGTTAAAGGCCTCTACAGCCTCCGTCCAGACTGGGCCCAGTTAGCCCCGGATCTCTTCTCTGGGTTTATTCCCCAGATCAACCCTCCTGCTGTGGAGTCTCTGCTTCCTGACTACGCCGCTCATGACCAGAAGTTGCAGATGGAGCTCTCCATGAACGGCTTCCCACGaggtGACCAGTCTCGCAAACGGGCCAGCGACGACTCCTGATAGCAGAGCCGGCGTCACCAGATTGGTTGCAGAACTATTTACTGTGCCTCCTACATCTTTCTCACGAGTTGACCCACTGCACTAGGTACAATGTTGACAATGTGTCAGTTTCATCTCTCTCGACTCAGTCACAAATCACTGTGAACAACAAAAGGGTTGTTGAGCAGCTTAATCTTacagcactaaaaaaaaaacaaaaaaaaaacacagacacagacttcCATTATGGTGCTTTCCTGTGTGATTATGATGCATCCAGCTTCAGTATTTGTGGGATGCTGCTGTGTGCTCTGAGATGGGGTTCTTGATGTTCTCCTCATTTTGAAGAGTGCCTCCATGGTGCCTTCTGATTGGATATCCTCATGACGGATAGGCTGATGATGAGTATTTCATTCCTAACCTTTAACatggaagtgtcttttttttttttttttttttttttatagactgGGCTAATCGAGACTTTCTATTGCTGCTAATAATACTGTCCATGTGGTAATACTACAACTCCCTCAGTTTCACCCACTGTGTCTGTAACCAAGTCACTCAACACAAATGAGTGTGGAAAGAAATGAGAACAAGGGCAACTAAGTCATTGACCTCAACTATGATTCCCTTCTTCATCTTGCCTCTACTGTGTTGGTAAACCGGATTGTATTTTCCCGTTACGCCAAAGAGGATTTGCAATTTCttttgttattcttttttttaatataaactgCATTGGATTTAGGCTGACCTTGTTATTGTTGTATACTCTCTGATTCACTGagccatttaatttttttttatactagcACGTTATGAGCTTTAGTTGACCTGTTTGTTAGGCTTGAGTCAAATTCTAACTTTAAATATCCCTTGTCTTTTTTAGCCTTGCATGTAGGATTGGCAGGGATTGCCATGTAGGACATTACACTGTTTGCCAGAAAGCTTAAACAACCACAGAATAGTGTTTGACAATTTCCTTATTTacctttttagtttgtttgactgcTTCATGGATTTTACAGAAAGAATGATTAAGCCAATATTGTTTGGCCCCAGTCTGGCGTACTTGTGCATTAAATGTTCCTAACATGCAAATCCTGATAATGATGTAAATAACTTTTGGTGTTTGCATAGTGGTCAGTATACACTAACTTTTTTTCACAGatgcatttttgttaaaaaaaatatattattatagtatttgATACAAGTCCTACACTGTTTTAAGTGTAAATAGATGCTCAGGCTTGCTTTTCGTTTCCCTCTGTGGGTCTTGAAAATGGTTCTCATTGTCTTTCCAATAAACTAATTTCATTATTCATGGGACACGGAGGTGATTGTGTTTTTCACTATTCAAGATTTGAAATCTGGGTCTTGAAAAAATGTTCTCTTAAAGTAGGCATTATGACAAACCTAAAGAAGAACAAACACTGGATGTACTATGTTACTTGCTGAGATATCCCTCTTTCTCTTACATCCTGCAAAAATATCCATGTTAAAACAACTAAACAACTGTGAATAAACTTCCACTTGGCTCAAATTCTGTTCCAATAATCTA

Function

GO:

id name namespace
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0031461 cullin-RING ubiquitin ligase complex cellular_component
GO:0031625 ubiquitin protein ligase binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005637083.1 lncRNA upstream 19923 25117090 ~ 25119124 (+) False LOC120547601
TU266849 lncRNA upstream 19925 25117078 ~ 25119122 (+) False LOC120547601
TU266852 lncRNA upstream 21680 25111395 ~ 25117367 (+) False LOC120547601
TU266903 lncRNA downstream 33905 25178159 ~ 25181813 (+) True G196558
TU266908 lncRNA downstream 45176 25189430 ~ 25189679 (+) True G196563
TU266954 lncRNA downstream 75293 25219547 ~ 25219914 (+) True G196595
TU267020 lncRNA downstream 174012 25318266 ~ 25320869 (+) True G196648
TU267076 lncRNA downstream 283389 25427643 ~ 25433896 (+) True G196690
XM_039784103.1 mRNA upstream 498 25131454 ~ 25138549 (+) True sirt1
XM_039784104.1 mRNA upstream 1715 25131453 ~ 25137332 (+) False sirt1
XM_039783534.1 mRNA upstream 30967 25091886 ~ 25108080 (+) True herc4
XM_039783532.1 mRNA upstream 49977 25085914 ~ 25089070 (+) True LOC120547833
XM_039784171.1 mRNA upstream 54277 25075214 ~ 25084770 (+) True fam83ha
XM_039784272.1 mRNA downstream 303 25144557 ~ 25164629 (+) True mypn
XM_039784234.1 mRNA downstream 23671 25167925 ~ 25169050 (+) True atoh7
XM_039784114.1 mRNA downstream 26850 25171104 ~ 25177459 (+) True pkd2l1
XM_039784295.1 mRNA downstream 47565 25191819 ~ 25197871 (+) True bag3
XM_039784597.1 mRNA downstream 54285 25198539 ~ 25213504 (+) True inpp5f
TU266801 other upstream 128286 25008512 ~ 25010761 (+) False dact2
TU266740 other upstream 569880 24564550 ~ 24569167 (+) True G196439
XR_005637109.1 other upstream 771448 24357926 ~ 24367599 (+) True LOC120547848
XR_005637111.1 other upstream 1533473 23562283 ~ 23605574 (+) False disc1
XR_005637123.1 other upstream 2469580 22647914 ~ 22669467 (+) False tasp1
TU267128 other downstream 469153 25613407 ~ 25620675 (+) True prdx3
XR_005637133.1 other downstream 672997 25817251 ~ 25824677 (+) False LOC120548053
unassigned_transcript_1122 other downstream 838491 25982745 ~ 25982838 (+) True trnai-uau_2
TU267544 other downstream 1518905 26663159 ~ 26663785 (+) True G197053
TU267563 other downstream 1581505 26725759 ~ 26735787 (+) False tmem254

Expression Profile