RNA id: TU266908


Basic Information

Item Value
RNA id TU266908
length 250
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G196563
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 25189430 ~ 25189679 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tttgtataaGAGAGGAATGTATGTGGGGAAAAAATGCCGCTAAATCACGAGACTGCTGAATTTTTACTCAAAAAATAAATTGCTGTGATACCTCTGGGAGTATGGCAAGGAAACGGAAACATGCTTTACTGTCTATCATATGTCTTTTTGATACTAGCACTAGGGGGCGCCAAAGACAGGAACTTTGCTTTAATGAGTTTTTGgcaagtgcttttattttgaagtaggcAAAGTTTATTAAAGGGCCAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU266903 lncRNA upstream 7617 25178159 ~ 25181813 (+) True G196558
TU266891 lncRNA upstream 45198 25143165 ~ 25144232 (+) False cacul1
XR_005637083.1 lncRNA upstream 70306 25117090 ~ 25119124 (+) False LOC120547601
TU266849 lncRNA upstream 70308 25117078 ~ 25119122 (+) False LOC120547601
TU266845 lncRNA upstream 72063 25113020 ~ 25117367 (+) False LOC120547601
TU266954 lncRNA downstream 29868 25219547 ~ 25219914 (+) True G196595
TU267020 lncRNA downstream 128587 25318266 ~ 25320869 (+) True G196648
TU267076 lncRNA downstream 237964 25427643 ~ 25433896 (+) True G196690
TU267084 lncRNA downstream 304694 25494373 ~ 25495505 (+) False LOC120548229
TU267082 lncRNA downstream 306989 25496668 ~ 25499150 (+) True G196696
XM_039784114.1 mRNA upstream 11971 25171104 ~ 25177459 (+) True pkd2l1
XM_039784234.1 mRNA upstream 20380 25167925 ~ 25169050 (+) True atoh7
XM_039784272.1 mRNA upstream 24801 25144557 ~ 25164629 (+) True mypn
XM_039784767.1 mRNA upstream 45176 25139047 ~ 25144254 (+) True cacul1
XM_039784103.1 mRNA upstream 50881 25131454 ~ 25138549 (+) True sirt1
XM_039784295.1 mRNA downstream 2140 25191819 ~ 25197871 (+) True bag3
XM_039784597.1 mRNA downstream 8860 25198539 ~ 25213504 (+) True inpp5f
XM_039784598.1 mRNA downstream 8860 25198539 ~ 25210811 (+) False inpp5f
XM_039784596.1 mRNA downstream 8860 25198539 ~ 25210811 (+) False inpp5f
XM_039784599.1 mRNA downstream 13893 25203572 ~ 25213504 (+) False inpp5f
TU266801 other upstream 178669 25008512 ~ 25010761 (+) False dact2
TU266740 other upstream 620263 24564550 ~ 24569167 (+) True G196439
XR_005637109.1 other upstream 821831 24357926 ~ 24367599 (+) True LOC120547848
XR_005637111.1 other upstream 1583856 23562283 ~ 23605574 (+) False disc1
XR_005637123.1 other upstream 2519963 22647914 ~ 22669467 (+) False tasp1
TU267128 other downstream 423728 25613407 ~ 25620675 (+) True prdx3
XR_005637133.1 other downstream 627572 25817251 ~ 25824677 (+) False LOC120548053
unassigned_transcript_1122 other downstream 793066 25982745 ~ 25982838 (+) True trnai-uau_2
TU267544 other downstream 1473480 26663159 ~ 26663785 (+) True G197053
TU267563 other downstream 1536080 26725759 ~ 26735787 (+) False tmem254

Expression Profile