RNA id: TU267076


Basic Information

Item Value
RNA id TU267076
length 3261
lncRNA type sense_over
GC content 0.40
exon number 2
gene id G196690
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 25427643 ~ 25433896 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

taaaaagggaaaagaatTAAAGACCGTTTTAATGCTTTAAATATAGTaaatgttatgttgtgaatgtaaaAGAGGGGCATGGAAGTGGGTTTTAATTTAGCTTTTGGAATGTTGTGGGAAGGCGTGTTTTCAAGACCTTTTTAGCGTTGCAAATGCAACCCCACAGGAGATCAGGGTAATGTGGGTAATCCTGGTGTAGAAAAAAACCCAGGAAAAATCTCTGTCTGTAAATCTCCAACTGAAACCATTTAGCATCATGCAGTTTTATTTGATTTGCTCCCAGACTGATCtaatgtgtgtgcgcgtgcgtgtgtgtgtgtgtgtgtgtgggggggggggtggagtCACACAGTTGGCTAAGGAAAAACCAATCCAAAGAGtacaagagagagaaaaaattatGGAGCATTCAAATTAATTCCTAAGGCGCCCATTGGTGTCTGCATTGTGTTATTTTTCATTACATTTCAGTGATTTTAGCGTTCAGGCCCACCTTCAAATTAAATCTGGTGTACATTACTGGATGATGCGTTTATTTATTGCTGTAAAGTGGGTTAATCATGAAGGcgctcttttcttcttctgaggaagagaaaggaaagaTTAGGGCCCTAATGCAATGTACAGGATAATGTGCGATAGGATTTGGGAGAAGAAAATGAAATTTGGCTGCTGTAAACAGTTGTGAGCAGTTGTAAACAGGGAAGTTGAGTGAACGTTTTGGGGGTGGGGAGATTTTGGGGGTGAACATGAAACAGAGGCTTTGCTGTTGTCCCTCACCCATGCTGGGAGACATGCTATTGTTTCTCAGCCCGAACAAGAGGCACGCGCTGTTTCTCCAGCCTCCTCTCATTGGGTGATGAGCTCTCTTCAGCATCTGGAAACTCGCGTCGATTCCTCTCGCTTTTTACTTTGATCTTTTTTTGGATCTGCAGCGTTTTTCTTCCGCAGCTCCTCGCGTCTCTCCAATGCTCATCCACATTCCAGGAAGTGTTAATTGCAAACGGCacgccaaaaaaaataaataaaataaaatgcatgatAATTACTTTTATTCATAATGcttgcttatatatatatatttatttttttcaaccatAGAAAATGATTGCTTTGCTTCAAGGTAATGAGAATTCAAATGAATTCCCACctaagttgtttgcatttcacgTATTTGGGCACTTTGTCCCTTTTTAGTGAGGAGCAGTGTTCTCTTAGCTCTGCTGTGTAGGCTGAAACAGGACGAGGAAAaatgagattaaaaaaaacttttgtagGCAATTATTATACAAAACACCTGAGCTGAAGAAACCTAGATATGAGCTACATAATGTGAGATATGTGTATACAAACCACAAAAACAATTGCTGAAATTTGAAAAATCGAGCTTTCCGTATCATTTTACAATTTACACCCAAGCCAGTCACACGACCGTGTGTCTGAGAAGCTGTCAGTTGGTGAGAATTGGTGCTAATTAAACTATTAATTATCTCTGTAATGAGGCGCGAGTTAAAACTGTGTTAAGCACATCAAAGTACAACATGGGATTTCTTCACTTTGATGACTGCTATGAAAAATACATCTTgactgaagagagaggaaaCATCAGAGATGCTTTATTAACGAGACAAAAAAGTAGTCCTATTTTGGAGCCCCTTCAAAAGCTCTGGATAACTCCTCCAGAACAACGTGACGGTTTAATAGTCGGGTTTTATTTAAAGGTGTGATTATTGCATATTTCAACGTTGCACAACTTCTCAAAAAAATAAGAACTTTTCAAGAAGGTTATATTACATTTCTCAATATCTTGCATTCAAAACAAGCGGCAGAAAgcatgtgtgaatatgtgtttTCCATTATGTAAAAGCCATGTACTGTAgccatttcttttcttcttctttttttttttaaagccagtaGCTGTCAGTGAACATGGCCAGCGCTGATCCAAGAGCAGCGCGGCGCCGTATCAATAGCATCTCACTTTATTAATCTCTTGGAACACAGGGTAATGCCTTGAGCAGAGATGATACTGCTTTTAAGCTGGAAAATCCACTTTCCCCTCTCGTCATGTTGAGGAGCTGTTTTCTACAGTCTGCTCCTGGAGGCCAGTCTTAGCCCCTGACCTAGGCTGATTTGTTGTGAAAGGCGGAGACAAATTCCTTGGGCACATGTCGAACCACTTCTAGGAAAAGTGTTTGTTGTGTAGTGGgggtgtgtggagagagagagaaaaaacacaacagcaacaaTCCCATTAAATGGTTGGAAAGCTACTGTAGTATGAAAGGGGAACACATGTTGCCGGTAACACGACATCGGCGCTATCGCTTTCTGCTATCGCCGGCTAGAAGAGGATTAACTCGAAGGAAGGATCTCTGAGATGCAGCCGATAAAGGCTGGCAACGTTCTCAACAGCTCCCACCTAACGCTACGTGTTAGGCTACATCAGACATGCTGATGTGgctttgtttgtgtgcattGTTCAGGTCTTTCGATAACATTTTAGCTGTGATGTCTTTTATCATGTAACTACAGCTTGTTACACTTGCTCTCATTGAATTTTCCCTGCGTTGTAAATAAAGGTTTCCATCAGTATttgatttataaaatgtgttgCCTTCATAAGGGACAGGGCTGCAActagcgattattttcattatcgacaAATCcgccgattattttctcgattcgACATTTGGTCTATAGAATGTccgaaaatagtaaaaaaaaaaaaataaataaagtgtccatcccagtttctcaaagtccaaggtgatgtctttaaatgtcttgtatTGTCAGTCCAAagtccaaagatattcagtttatgatataaaacagagaaaagcaggaaGTCTCTATATATGAGAGGCTGAAgacagcattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggggggggggggtggtgtgtggttgggtttgtgtgtcaaactgtgttgctgtgtgtttgggtttgtgtgtcAAAAATGTGAAAGATATATATGTGGATGAGTGGAAATGAATGGTATATGTGGATGAGTGGAAGCATGGAGAGTGTATGGTTGGGGAGGTGTGTATGTAAAAGTATGAGCATGCATGAGTGTGGTTTAAGATCCTGTGGAGTAGAGGAATACTGTTACTAGTAGGAGTTGTACTCTTGATTGGAGTATGCAATTACACAGTATGCATGTATTACTTGTTGatgg

Function

GO: NA

KEGG:

id description
ko04966 Collecting duct acid secretion
ko05110 Vibrio cholerae infection
ko05120 Epithelial cell signaling in Helicobacter pylori infection
ko05323 Rheumatoid arthritis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU267020 lncRNA upstream 106774 25318266 ~ 25320869 (+) True G196648
TU266954 lncRNA upstream 207729 25219547 ~ 25219914 (+) True G196595
TU266908 lncRNA upstream 237964 25189430 ~ 25189679 (+) True G196563
TU266903 lncRNA upstream 245830 25178159 ~ 25181813 (+) True G196558
TU266891 lncRNA upstream 283411 25143165 ~ 25144232 (+) False cacul1
TU267084 lncRNA downstream 60477 25494373 ~ 25495505 (+) False LOC120548229
TU267082 lncRNA downstream 62772 25496668 ~ 25499150 (+) True G196696
TU267083 lncRNA downstream 63108 25497004 ~ 25499280 (+) False G196696
XR_005637158.1 lncRNA downstream 67633 25501529 ~ 25584577 (+) True LOC120548233
TU267118 lncRNA downstream 160600 25594496 ~ 25674904 (+) False zgc:110045
XM_039784396.1 mRNA upstream 109510 25316395 ~ 25318133 (+) True neurog3
XM_039783765.1 mRNA upstream 128197 25296263 ~ 25299446 (+) True pcbd1
XM_039784600.1 mRNA upstream 195131 25222425 ~ 25232512 (+) True LOC120548364
XM_039784599.1 mRNA upstream 214139 25203572 ~ 25213504 (+) False inpp5f
XM_039784596.1 mRNA upstream 216832 25198539 ~ 25210811 (+) False inpp5f
XM_039784330.1 mRNA downstream 47935 25481831 ~ 25495343 (+) True LOC120548229
XM_039784335.1 mRNA downstream 171570 25605466 ~ 25610518 (+) True dennd10
XM_039784338.1 mRNA downstream 180561 25614457 ~ 25620649 (+) False prdx3
XM_039784288.1 mRNA downstream 228917 25662813 ~ 25674906 (+) False zgc:110045
XM_039784286.1 mRNA downstream 228919 25662815 ~ 25674906 (+) True zgc:110045
TU266801 other upstream 416882 25008512 ~ 25010761 (+) False dact2
TU266740 other upstream 858476 24564550 ~ 24569167 (+) True G196439
XR_005637109.1 other upstream 1060044 24357926 ~ 24367599 (+) True LOC120547848
XR_005637111.1 other upstream 1822069 23562283 ~ 23605574 (+) False disc1
XR_005637123.1 other upstream 2758176 22647914 ~ 22669467 (+) False tasp1
TU267128 other downstream 179511 25613407 ~ 25620675 (+) True prdx3
XR_005637133.1 other downstream 383355 25817251 ~ 25824677 (+) False LOC120548053
unassigned_transcript_1122 other downstream 548849 25982745 ~ 25982838 (+) True trnai-uau_2
TU267544 other downstream 1229263 26663159 ~ 26663785 (+) True G197053
TU267563 other downstream 1291863 26725759 ~ 26735787 (+) False tmem254

Expression Profile