RNA id: TU267082


Basic Information

Item Value
RNA id TU267082
length 2483
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G196696
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 25496668 ~ 25499280 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCCCAGCTGAGTGCTTACACTGGATCTTTGGAATGTCGACAGTCAACAAAAACACTTGTTAATTTAAGTTCTTTATGAATGTTCCACCTTGTTACGTACTACTTTTTTACTGCTGCTGCGAACGTAGTTGCTTCATCTGAAGGTATGTGATCTCCTTTTGGACTTGAAGCCAAAATCTCTTGTCAATGAATGTATTCTGGTTTGCTTTGAAATACATAATTCTGAAATGTAtaatcatatacagtacactaaCAAGGCTATTTGAACCTTGCTTgcctttttaaaagtattttggTGTATCCAAAGAGATCATTTCATGTGGTTCCCCCTGGCCCCTGGTCTTTCCTCTATTAAGTCTGACAAAACTCCGACATCTTCATTATGGACAAGAGGTTATTGTCGGTGTATATGCTTTTTGTGTGCGATGATGTGACACAGATGTTGGGTAAATTTCTTTTGTATTGTGAGAACGGTTATTTGATCTGCATATGTTTTGTGAAGCCAAACATGTTTGTATCAGTTCATACAGTGAGTATTATGTGATACTGATCAAGAAGATATGTGGATTAGAAGCTTCTTCTCACTGATTGCCTTCCTACATCTGCTGGAGTGGGAACTCTCATGTTACTTTAACTAGTCCGTAGGGGTCGTTAGCCAGTTGTTCATGGACCTCGCTGAGCTCCTAATACTTCcgttgtacatactgtatagtcACTTTGTAATATCACTTCACCCTCCTTGGACTTTTTGCCCATCTCGTTGTGCCgcaaaatgtttgaaaatgtgCTTCCTGGCGTTTTTATTCTGTCTGAGGGTCAGTCAAAGTACGAGTTAAGTTTAATTACAATTTCAAAAGTAGCAATTAAGAGCTAAACTGACATTGGCAAACATGCATGCTAGCAAAGCAAAAGCGTGTGGTGTTCAGTGTAGGTCCTATTGTGCATCATAGAGTACGGAACAGGTGATTTACACTCAGGGCTACGGTGTACCCTAAAGCGCCGTTGCTTTGCTTGAATGctgaaataacaaatgataaggtcttttaaataaaaaaaatgttgaacacATTTGGACCCTGAGGTTATTTAGTTCAAATGGAAATTGAGGAGAGTGTTgttcaaattaattaattttgccTGTCATATTTTCTTTCAGCTTGATTGCTACATTTGCTTTGTGCTTTAATCTAATTTGGTGCTTTGAAAGATGTCAGACTAAAACGCACATCTAAATGAAAAGCATTTTCAAATAATTTTCGTGCACAACATTGTAAAGGGGTACATtgcaaaagaaacaacaaccctgcatcattattattattcttcctTGCCTCTTTGCATAATGTTTGTCATCCAATTAATGCCAGTGTTTGAATATGCAAAGCACTCAAAATGCAAAGCAGGCAAAAATTTCCTATAAAATTTGGCCACGGCCTGTGTCGTCATTTAAATTTGTATAGATTGTTTTGCACACGCATTGAAGTATGTTTTAAGTGTTGTAGGTGAAAGTCCGCGGCATTccaaaaaccaacaacaacgGTGCAAACATAAGGggattttttttctatgttGTCGAAGCATGCGTTGAACCTATTGATGAAGATGACATAAAGCTCAAGTCGGATCTCACTATTCTGCTCTGGCAGTCTTCTAAGTCTTCTACTGATAATATGATGGTGCTTGCCATAGGCCACATACAGCTGCCAGACGCTAAGACTTAAGCTCCCGCTAAATCCCCTGACGTTGCTTGTAATGTGGCACACAGTTTTGAAGGAAATGATGACTGTGTTTATGAAAGATCTCGCCAGTTAGCAAAGCTTCATTGAGTTTACAGAATGGAGTCTGGTGCACAAAGGTGCCAACACAATTCAGCCTAATTTGAGTTGAGTTTATTGCGCCAACATGGTGGAGACCTAAGATGACATTTTGATACTTACATGTTGGACTACTTCTGAAGTCGATGTGTACTGGGTCTCTGGGTTTACACGGGCACACGCCTTgtaatgtaataagataaatttAAATGGGTCTGTTTCGATACTTGTCATTTCTGCATGTTAATCACATGTTTTGATTATGTAACACTTTATATTATTGCCAAATTAAATGGCATTTTCCTGATCTAGAAACATTGATTCCACTGGATTGGGTTAATTTCCATCAACCCTCATCACACTACCGTATTGTAATGTATTCAGAATTGtatagtgttaaaaaaaaaaagtccttttCATGGGAGAAGGTAGAtgagttttgtgtgtttttattttgacaccATAGCCAATATGCAAGACTTTCATACCTGGATGTATGGGGACAAGAATGTatgccttttttgttttattattattattgtattattctcGAAACACATTGGGGTCTagaatatatatgtattataataACAAATGATGACTGTATATAAAGTGCCAACACAAGCACTAATTCATGAGAATTTggtgatgcatttttttttaatattca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU267084 lncRNA upstream 1163 25494373 ~ 25495505 (+) False LOC120548229
TU267076 lncRNA upstream 62772 25427643 ~ 25433896 (+) True G196690
TU267020 lncRNA upstream 175799 25318266 ~ 25320869 (+) True G196648
TU266954 lncRNA upstream 276754 25219547 ~ 25219914 (+) True G196595
TU266908 lncRNA upstream 306989 25189430 ~ 25189679 (+) True G196563
XR_005637158.1 lncRNA downstream 2379 25501529 ~ 25584577 (+) True LOC120548233
TU267118 lncRNA downstream 95346 25594496 ~ 25674904 (+) False zgc:110045
TU267208 lncRNA downstream 280376 25779526 ~ 25794408 (+) True G196782
TU267222 lncRNA downstream 313065 25812215 ~ 25812441 (+) True G196788
TU267300 lncRNA downstream 405570 25904720 ~ 25907869 (+) True G196841
XM_039784330.1 mRNA upstream 1325 25481831 ~ 25495343 (+) True LOC120548229
XM_039784510.1 mRNA upstream 65759 25413994 ~ 25430909 (+) False fam204a
XM_039784335.1 mRNA downstream 106316 25605466 ~ 25610518 (+) True dennd10
XM_039784338.1 mRNA downstream 115307 25614457 ~ 25620649 (+) False prdx3
XM_039784288.1 mRNA downstream 163663 25662813 ~ 25674906 (+) False zgc:110045
XM_039784286.1 mRNA downstream 163665 25662815 ~ 25674906 (+) True zgc:110045
XM_039784289.1 mRNA downstream 163666 25662816 ~ 25674906 (+) False zgc:110045
TU266801 other upstream 485907 25008512 ~ 25010761 (+) False dact2
TU266740 other upstream 927501 24564550 ~ 24569167 (+) True G196439
XR_005637109.1 other upstream 1129069 24357926 ~ 24367599 (+) True LOC120547848
XR_005637111.1 other upstream 1891094 23562283 ~ 23605574 (+) False disc1
XR_005637123.1 other upstream 2827201 22647914 ~ 22669467 (+) False tasp1
TU267128 other downstream 114257 25613407 ~ 25620675 (+) True prdx3
XR_005637133.1 other downstream 318101 25817251 ~ 25824677 (+) False LOC120548053
unassigned_transcript_1122 other downstream 483595 25982745 ~ 25982838 (+) True trnai-uau_2
TU267544 other downstream 1164009 26663159 ~ 26663785 (+) True G197053
TU267563 other downstream 1226609 26725759 ~ 26735787 (+) False tmem254

Expression Profile