RNA id: XM_039784330.1


Basic Information

Item Value
RNA id XM_039784330.1
length 3228
RNA type mRNA
GC content 0.44
exon number 6
gene id LOC120548229
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 25481831 ~ 25495505 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCTCGCCGCTAGCCGACAAGCAGAAGTGAAAAGCAATGgatagcaacagcagcagcaggagcagcaacaacaacaacaacaacaacaactaacaTTAGCTGGCGTATTCCTCAGGAAACATCACATGAATGTATTTGTGAAGCCAGTCTCTGCTGACCTGCAGTGCTGAATGTCCTTCTAAGTGTCGATGAAAATGACCCCGAGATGACTCAACAGTGGCTTGGACATCTGTAATTTGACAAGATGAGGCTTGCTCAATTTGTCAGACTTGTCATTGCTTGTAATGATCGCAACTGTAGGCACATATACTGCACCGACATGGACAACAAACTAtagtgaattgttttttttgtttttgttttttgcgtTTTGCTATCACACTAACTACATACATTATCATTTAGTTTGTTTTGAATGGCTTTCAGTTGATAACCAGTGCTGATGATGTCACTGGGCGAGCAGTCTCAAAAGTGGTTTCCAACCCATGTCCAAGCCACTGTTCTTCAAGCAACCGGTTTACAGCCCAAGGGCAAAAATGGCACCAATGATGCCTACACTATCATCCAGCTGGGCAAAGAAAAGTACTCAACATCGGTGGCAGAGAAGACACTTACCCCTGTCTGGAAAGAGGAAGCCTCCTTTGAATTACCTGGTTTACTTTTGGAGGGCAACCCAGAAGTATATGAACTCTGCCTTATAGTGATGCATCGGTCCTTGGTTGGGATGGACAAGTTCCTGGGTCAAAGGTCCATCAACCTTAATGAAATCTTTGACAACAAGCAACGGAAGAAAACTGACTGGTATTCCTTGGAGTCCAAGCCggggaagaagaggaaagaacGAGGCCGCATTCAAGTCAGCATCCAGTTCATAAGGAACAACATGACGGCCAGCATGTTTGACCTCTCCATGAAGGAAAAGCCCCGCTCGCCTTTCTCCAAACTGAAGGACAAAATGAAGGGTCGCAAACATGACGGCGGCTTTAGTGACACATCGTCCGCCATCCTGCCTCGCTCTGCCATGTGCGACTCAGAGCCTAACCGTCAGTCCTTCGCCCCAGAACCACAACCCCAGCCTGAAACCAAGGTCAAGAGACCACTACTCACTGGGGCCCATAAACTCTCTGCAGCCCATTCTATGTCCGATCTCATTGGGACTCACTTTCGGCCCAAACTGGATTCCATGAACTCCATAGAAGAGAGTGGCGGCCCTCACAGGCGTTCCCAGAGCGAGGTGCCAGGCTACCAGGACGGCGAGGCACACAGTGACCCTTTCACTGATATCACTGACACCCTGCCACAGAAGTATGCCACGCTCCCACGCAACCGCAACCCATTTGAGGGGGAGCATGGGCAGCTGTGGGACCGGGCAGAGCGGaaggagaaaaaggagaagGTCAGCCTACTGGAACGCGTGACAGGGAAGAAGGAAGGCCGCAAGACCAACAATGGTGGGCGCTCGGGCAGCTCTGGAGATCTGCGTTCCCCCAACCCCTTTAGTGGAGACTCCCAAGCAGACACTAACCCGTTTATCTCCAACTACAAAGCCAGGGATAAAAAGTTAACAGGAAGTGAAGACATCACATTTGGCCATAAGAAGGAGGGCATCCATGGCAAGAAAAAGGAGGTGAAACAGGAAAGCGTGGCCGCCTACAGCAACTTGTCCTTTGAGGAAGTTGTGCAGGAACTCATCAAGCAGAAAGAAGTGGTGAAAAAGAAAGATGCCCACATCAGGGAGCTGGAAGACTACATCGATAACCTACTTGTGCGCGTCATGGAGGAGACGCCGAGCATTCTACGGAcaccatatgagccaaaaaagAAGGCGGGTAAACTTTCTAAAAAGTAGAAAGAAAGACGCAGGATCAAAAGTTACTAATGAGGGTTTAGCATGCATCAATATCACGTGGTAAAATAAGTGGGAACAAACGGGCTTGATCAAAGCCAAATTTCTGATTTGATTTATGTCTTTGCTGTAGAACATTTTTAGTTGAGGGATGTAGTTtttatatgctttttttttttcttttttcaatgttttgattgttttagTACACAGGTATTTTGCCCTCTCTGTTTAGCATTcctatatttacattttcaaattgctTTATCAATACTTGCCTCGGTGCGTTTTTAGGTAGTTAAACAGGATCAGCATCGATTGATTCGTGTCCGATCGAAtccatattattttttttttttttttggaaaaaaggtCAGGTTTAGCTATGTTTGTATGCACTTGTGAACCCACGGAGGTCTGTTGCACAACCGGCTGCCATCATCTACCCAGAAGCTGTTGAGGTGCAAATGCAAGCCAACTTCGTGTTTACCAGATGGTGTAGTGGCAGTTGTGTGCAGTTTGCTGAAAGACAGTCACGTGGTTGATAAGATGAAGCTGTGGTCGCTGTGTATACACTCAGTCTTCCACATACACAAGTCTCAAACTGTCCACCTGAACTACGAAACACATTCAGCGGCGGCAGCATCCGCTTTGTGTCCGAACCTCTTCTGTGCTACGGATCTGGAAGAACTCTGCTCTCCTCCCCAACAGCCTGAGTGATTCATGGGTTTTCTTAAAAAACGACTGGATGTTACGGTAAGAAGCTGCTGGAGTATCTGGGAGTCTGGTTTCTCTCTAGCTTACTGAGTCATGGGATTTCTCTTTTCTTCAAAAACAATGAACAAACGTACATTGCTGTTATCAGTTACTgactttttattctttattttatttgtgatgACTATCATTTAAGTATTTCGGACCAAGGGTCTCAGTCACTCACTGAACGTGATCATTTTACTCACTTTAAGTGCAATAATCATAACTTGAGTATCTTGCTTTATATTCTGCTGGTAATGTTCTTGTTTACATTTAATCACATCTTTGAGTCAAACTCGCCTCTTAATATTGATTTGATTCACTGGAAAAGCCTGGAGGTCTGTGTTCCAGCCTCCACCGATTGACCAGCCTTCATCTCCttcaaataactttttttttttttttttttttttttttgctgaagaTTGTATTAATGGTACTTATAGCTGCACATGTGGATACATGCTGAACAATCTTTATTTACAGATGTttcacatcatatttgtaaGGTACTTCATGGTTAAAACACTACTGTATCCCAATACCCCCTCCCTCACCACCCTTTCTACTATATTAACACTGTATAGTtagtacaaataaaataaaaaatctcctTGATAAGTA

Function

GO: NA

KEGG:

id description
K12484 RAB11FIP1_2_5; Rab11 family-interacting protein 1/2/5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU267076 lncRNA upstream 47935 25427643 ~ 25433896 (+) True G196690
TU267020 lncRNA upstream 160962 25318266 ~ 25320869 (+) True G196648
TU266954 lncRNA upstream 261917 25219547 ~ 25219914 (+) True G196595
TU266908 lncRNA upstream 292152 25189430 ~ 25189679 (+) True G196563
TU266903 lncRNA upstream 300018 25178159 ~ 25181813 (+) True G196558
TU267082 lncRNA downstream 1325 25496668 ~ 25499150 (+) True G196696
TU267083 lncRNA downstream 1661 25497004 ~ 25499280 (+) False G196696
XR_005637158.1 lncRNA downstream 6186 25501529 ~ 25584577 (+) True LOC120548233
TU267118 lncRNA downstream 99153 25594496 ~ 25674904 (+) False zgc:110045
TU267208 lncRNA downstream 284183 25779526 ~ 25794408 (+) True G196782
XM_039784513.1 mRNA upstream 50922 25413993 ~ 25430909 (+) False fam204a
XM_039784510.1 mRNA upstream 50922 25413994 ~ 25430909 (+) False fam204a
XM_039784512.1 mRNA upstream 50922 25413994 ~ 25430909 (+) False fam204a
XM_039784508.1 mRNA upstream 50922 25413995 ~ 25430909 (+) True fam204a
XM_039784509.1 mRNA upstream 50922 25413995 ~ 25430909 (+) False fam204a
XM_039784335.1 mRNA downstream 110123 25605466 ~ 25610518 (+) True dennd10
XM_039784338.1 mRNA downstream 119114 25614457 ~ 25620649 (+) False prdx3
XM_039784288.1 mRNA downstream 167470 25662813 ~ 25674906 (+) False zgc:110045
XM_039784286.1 mRNA downstream 167472 25662815 ~ 25674906 (+) True zgc:110045
XM_039784289.1 mRNA downstream 167473 25662816 ~ 25674906 (+) False zgc:110045
TU266801 other upstream 471070 25008512 ~ 25010761 (+) False dact2
TU266740 other upstream 912664 24564550 ~ 24569167 (+) True G196439
XR_005637109.1 other upstream 1114232 24357926 ~ 24367599 (+) True LOC120547848
XR_005637111.1 other upstream 1876257 23562283 ~ 23605574 (+) False disc1
XR_005637123.1 other upstream 2812364 22647914 ~ 22669467 (+) False tasp1
TU267128 other downstream 118064 25613407 ~ 25620675 (+) True prdx3
XR_005637133.1 other downstream 321908 25817251 ~ 25824677 (+) False LOC120548053
unassigned_transcript_1122 other downstream 487402 25982745 ~ 25982838 (+) True trnai-uau_2
TU267544 other downstream 1167816 26663159 ~ 26663785 (+) True G197053
TU267563 other downstream 1230416 26725759 ~ 26735787 (+) False tmem254

Expression Profile