RNA id: TU267118



Basic Information


Item Value
RNA id TU267118
length 837
lncRNA type read_through
GC content 0.37
exon number 2
gene id zgc:110045
representative False

Chromosome Information


Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 25594496 ~ 25674906 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


TGGTGAGCAAACCTCTTTATTAATAAAGGCTTTATCTGTAAACATGCAACCTGGTTGGATACCGTTGATTGCAACAAGAAAGAGCCACACACTGGATATCAAGCGAGACCAATTGAATACTCTAAGCATGCACAGCAAAATGTAAATTCCACTAGTTCTTTAACAGGTTAAGAAGCATCTGAAACATTAGATGAAGAGCAGAGATCACGGAAGCAGATGACAAATTCCTAGTCATTGTCATTACAACAGTTGTTGATTTGTGGCACAATATAATATCTATGAAAAATGATTAAGAAGAGACGTTGGTGATGCACTGAGTTTGTATTGAAAGATGTAGCAGGTACATATGGTTTTCAGTTTAGTCAGTTTCACTTCATGTAAGGTAATAACCTCTCTAACCATTCAGGGCAGTCATGTTTACATTTGTGATGGTTTGCATGAGACCTAAAGACCTGCACACAAGTTCATTGGTTGATGGTGTTTTGGGTGGAAAGGAGACTGGTTCAAAATGCTGAAAgtcaaaataaagataaaagggaaaaaaaatccccaGGAAAACTACGGTCTACAAATATTTTGTCCAAAAGGAATAACGCACGAGTATCGGAAGCATGTGGCCATGAATTCACCACTGCGGTTTACTGGCTGATGGGCTActgaatattatattttttttcaaaaccaaCTCTTCATTAACTGAGCCAAATGGATGCTGAGCCGTTATTGTAATACATGTTTTATTCATGTGTTTCTGGTGTGGGTCTTCCGACAAACAATGCCGATTTGAAATATTTGTTGATGTAATGACTTTTAAATAAATGGGACTTTTTATGAATA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
XR_005637158.1 lncRNA upstream 9919 25501529 ~ 25584577 (+) True LOC120548233
TU267083 lncRNA upstream 95216 25497004 ~ 25499280 (+) False G196696
TU267082 lncRNA upstream 95346 25496668 ~ 25499150 (+) True G196696
TU267084 lncRNA upstream 98991 25494373 ~ 25495505 (+) False LOC120548229
TU267076 lncRNA upstream 160600 25427643 ~ 25433896 (+) True G196690
TU267208 lncRNA downstream 104622 25779526 ~ 25794408 (+) True G196782
TU267222 lncRNA downstream 137311 25812215 ~ 25812441 (+) True G196788
TU267300 lncRNA downstream 229816 25904720 ~ 25907869 (+) True G196841
TU267292 lncRNA downstream 236857 25911761 ~ 25939959 (+) True G196836
TU267365 lncRNA downstream 315564 25990468 ~ 25992621 (+) True G196898
XM_039784330.1 mRNA upstream 99153 25481831 ~ 25495343 (+) True LOC120548229
XM_039784512.1 mRNA upstream 163587 25413994 ~ 25430909 (+) False fam204a
XM_039783070.1 mRNA downstream 3291 25678195 ~ 25707242 (+) True vwc2
XM_039784775.1 mRNA downstream 47705 25722609 ~ 25734715 (+) True LOC120548498
XM_039784569.1 mRNA downstream 65221 25740125 ~ 25758318 (+) False ikzf1
XM_039784566.1 mRNA downstream 65287 25740191 ~ 25758318 (+) False ikzf1
XM_039784565.1 mRNA downstream 65288 25740192 ~ 25758318 (+) False ikzf1
TU266801 other upstream 583735 25008512 ~ 25010761 (+) False dact2
TU266740 other upstream 1025329 24564550 ~ 24569167 (+) True G196439
XR_005637109.1 other upstream 1226897 24357926 ~ 24367599 (+) True LOC120547848
XR_005637111.1 other upstream 1988922 23562283 ~ 23605574 (+) False disc1
XR_005637123.1 other upstream 2925029 22647914 ~ 22669467 (+) False tasp1
XR_005637133.1 other downstream 142347 25817251 ~ 25824677 (+) False LOC120548053
unassigned_transcript_1122 other downstream 307841 25982745 ~ 25982838 (+) True trnai-uau_2
TU267544 other downstream 988255 26663159 ~ 26663785 (+) True G197053
TU267563 other downstream 1050855 26725759 ~ 26735787 (+) False tmem254
XR_005637113.1 other downstream 1251514 26926418 ~ 27109140 (+) False LOC120547882

Expression Profile