RNA id: XM_039784289.1


Basic Information

Item Value
RNA id XM_039784289.1
length 1889
RNA type mRNA
GC content 0.48
exon number 13
gene id zgc:110045
representative False

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 25594496 ~ 25674906 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTAGAGAAAATCCGGCCCTGTGCAGGCAGGAAGCTCTCTGAAAATCTAATGAAGAACACAGCAGTCATGCAGAGTTGTTAGTCCCAGAGCAAACAGAACAAAGCTTCTCTTcaatgtctgtatgtgtgttcttGATGACTGCAAAAAGGCTAGACCTCTCAGATTTTTTGTTGTGGTGGCTGTAACTGTAGCCTGCTCTAACTGTGCAGGACAGTGTCCAGCCAAAGAGCCTCTCTGCCCTACCCTCAGGCCTCTTCAGCTTGTGGATCTCCGTGCGGAGGAACGCCTCTTTGGTGGCTGTGACAGGGAGAATTAGGCAAGAGATGCGGGTTCACTTGCCCTGCGTAGGGGCTTATCTTGGGCTAAGCTGAGGGACTAATAGCAAAGCCAGCCTCCGCTCCAGCCGGTCTGAGGGCACAGGGAACCATCTGTCCACTCTGTGGATAACTGACAACAAAGGGGGCAAACATTGAACACGGACTACAAACTAAAAGGCCATTCATTTAGGAGATACCACAAATACAGAAGAGGAGCAAGTATTTTGTATATAAGACGATTTACATTAAAGCTTGGAAAACAGAGAATGTCTGACAAGGAAGAAATGGCTTCAGATGGGAGTCTGAATGTTACACTGACGTTAAGGCTGCTGATGCATGGAAAGGAAGTTGGCAGCATAATCGGGAagAAAGGAGAAACAGTAAAGAAGATGAGGGAGGAGAGTGGTGCTCGTATCAACATATCAGAGGGATCATCTCCAGAGAGAATAATTACCATCACAGGACCCACAGAGGGCATCTTCAGAGCTTTCTCCATGATCGCAGAGAAGTTTGAGGAGGATATTACTGCAGCAATGACAAACAGCAACGTGACAAGCAAGCCACCTGTGACACTACGCCTGGTTTTCCCAGGAAGCCAGTGTGGCTCCCTGATTGGCAAAGGAGGCTCAAAAATCAAAGAGATCAGAGAGACCACAGGCGCTCAGGTTCAGGTGGCAGGAGACATGCTGCCGGACTCTACAGAGAGGGCTGTCACAATCTCCGGCACTCCACAGGCCATCACTCAGTGTGTAAGACACATCTGCTCTGTCATGCTGGAGTCTCCACCAAAAGGAGCAACTATTCCCTACCGACCCAAGGCCATGACTGCTGGAGCCCATGCAGTGTTAGCACCACAACACTCTGCACATGCGTTTGCAATTCCAGGGCAGTATGCTTTTGCGCATCAAGATTTGACCAAGCTTCACCAGCTGGCTATGCAGCATATCCCCCTCCCTTCCCTTGGGCAGAGCAACCCTACCTTCCCTGGATTGGATGCATCTGCCCCCACAAGTTCACAGGAGCTGGCAATACCTAACGATTTTATTGGCTGCATAATTGGAAGACAAGGCAGCAAGATCAATGAGATTCGCCAGGTCTCTGGAGCTCACATCAAAATTGCCAGTGCCACTGATGGCTCAGCTATGCGCCAAGTCACGATCACAGGCTCGCCCGCCAGCATCAGCGTCGCCCAGTACCTCATCAACGCCAGGCTCTCATCAGTTCTAACAGGCTTGGGTGTTCTGTAGTAGCGTTGTGCTGTTGCAGTTCTGATGGGATTATCCTAAAGCCACATTGGATTCTAGTGGATTTCACTCTACCCGTAATCCTGTAGAGCGGGACTGGCCTAACTAACTCATTTATTGTTTCTGTAAGCTAGCTTGTTCCTTGTTTATTTCCCAACATAAATGACTGGAATGCTCCAACTTTCAGCATCTGAAATGGACTCGAGCCGTTATTGTAATACATGTTTTATTCATGTGTTTCTGGTGTGGGTCTTCCGACAAACAATGCCGATTTGAAATATTTGTTGATGTAATGACTTTTAAATAAATGGGACTTTTTATGAATACA

Function

GO:

id name namespace
GO:0003723 RNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005637158.1 lncRNA upstream 78239 25501529 ~ 25584577 (+) True LOC120548233
TU267083 lncRNA upstream 163536 25497004 ~ 25499280 (+) False G196696
TU267082 lncRNA upstream 163666 25496668 ~ 25499150 (+) True G196696
TU267084 lncRNA upstream 167311 25494373 ~ 25495505 (+) False LOC120548229
TU267076 lncRNA upstream 228920 25427643 ~ 25433896 (+) True G196690
TU267208 lncRNA downstream 104620 25779526 ~ 25794408 (+) True G196782
TU267222 lncRNA downstream 137309 25812215 ~ 25812441 (+) True G196788
TU267300 lncRNA downstream 229814 25904720 ~ 25907869 (+) True G196841
TU267292 lncRNA downstream 236855 25911761 ~ 25939959 (+) True G196836
TU267365 lncRNA downstream 315562 25990468 ~ 25992621 (+) True G196898
XM_039784338.1 mRNA upstream 42167 25614457 ~ 25620649 (+) False prdx3
XM_039784335.1 mRNA upstream 52298 25605466 ~ 25610518 (+) True dennd10
XM_039784330.1 mRNA upstream 167473 25481831 ~ 25495343 (+) True LOC120548229
XM_039784509.1 mRNA upstream 231907 25413995 ~ 25430909 (+) False fam204a
XM_039783070.1 mRNA downstream 3289 25678195 ~ 25707242 (+) True vwc2
XM_039784775.1 mRNA downstream 47703 25722609 ~ 25734715 (+) True LOC120548498
XM_039784569.1 mRNA downstream 65219 25740125 ~ 25758318 (+) False ikzf1
XM_039784566.1 mRNA downstream 65285 25740191 ~ 25758318 (+) False ikzf1
XM_039784565.1 mRNA downstream 65286 25740192 ~ 25758318 (+) False ikzf1
TU267128 other upstream 42141 25613407 ~ 25620675 (+) True prdx3
TU266801 other upstream 652055 25008512 ~ 25010761 (+) False dact2
TU266740 other upstream 1093649 24564550 ~ 24569167 (+) True G196439
XR_005637109.1 other upstream 1295217 24357926 ~ 24367599 (+) True LOC120547848
XR_005637111.1 other upstream 2057242 23562283 ~ 23605574 (+) False disc1
XR_005637133.1 other downstream 142345 25817251 ~ 25824677 (+) False LOC120548053
unassigned_transcript_1122 other downstream 307839 25982745 ~ 25982838 (+) True trnai-uau_2
TU267544 other downstream 988253 26663159 ~ 26663785 (+) True G197053
TU267563 other downstream 1050853 26725759 ~ 26735787 (+) False tmem254
XR_005637113.1 other downstream 1251512 26926418 ~ 27109140 (+) False LOC120547882

Expression Profile