RNA id: TU267128


Basic Information

Item Value
RNA id TU267128
length 1423
RNA type TUCP
GC content 0.48
exon number 8
gene id prdx3
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 25613407 ~ 25620675 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTTTATATTTAGGTTCTCTCCACCTCCAAGAAGACTGCGGGCCTCCTGTATTTCAGCCTGAAGAGAGCAGTATCAATAGTTAAACAGCATTTATTTTCTACTCCTCTCACCCTCGCAGAATAAGATCACTGTAGTGACTGCTAGACTTACATCAGAGGAAAGCAGGTGGCGCTACTGGGAGCACGTGCGTAAATGACGCAATAACCTGCTCAAACCTCTAACCGCCCTCCTCTGTCATAATCCAAAATGGCAGCCACCATCGGAAGACTACTCAGGACCTCTGTAAGTGCAACCTAACATCATATTTGATATCGGCACTCTTTCTCCTTACTTCGCTAGGAAGGAATCAGTAACGGACTACTGTCGGTAGCAGGTCATGATGAGTAGTCTACTCTACACTGAGGCGCTGTTATGGTTATGTGTGTCGCACATTTAAAACCTCCAGTCCCGGTGACAAACCTCTGGTTCGCGGCCGCTGTTTTAGACCAATATGGTTCACAAGAAATATTCAATTCATTATGAGCAGAgcaagGGTTGCAGCAGGAGGGTTGGAAGTGAGAGCAGCCTGTCAGCATGGATCATCTGGGGCTGCAAGAATCCTCACGGCTCCTCCACTTCAGAGAGCCTGCTTCTCTACCAGCACCTCCAGATGGAGCCCTGCGGTCACTCAGCCTGCTCCAGCTTTTAAGGCCACAGCTGTCCACAATGGGGAGTTCAAGGAGATGAGCCTCGCTGATTTCAAAGGCAAATACCTGGTCCTCTTCTTCTACCCACTGGATTTCACCTTTGTGTGTCCAACAGAGATCATCTCATTCAGCGACAAGGCCAGTGAGTTCCATGACATAAACTGTGAggtggtgggtgtgtctgtggACTCTCACTTCACCCACCTGGCATGGATCAACACCCCCCGCAAGTATCTAACAGGTATTGTTTGATGGTGTTCTGTCAGACTGGAGGCTTGGGCAACATCCACATCCCCCTGCTGTCTGACCTCAACAAGCAGATCTCTAGAGACTATGGCGTGCTGCTGGAGGATCCCGGCATTGCACTGAGgGGCTTGTTTGTCATTGATCCCAACGGTGTGGTGAGACACATGAGCGTGAATGACCTTCCGGTGGGCCGTTGTGTTCAAGAGACGCTTCGCTTGGTGAAGGCCTTCCAGTTTGTGGAGACTCACGGTGAGGTGTGTCCGGCCAGCTGGACCCCCGAGTCCCCAACGATCAAACCAACACCAGAAGGATCCAAGGAGTACTTTGAAAAAGTCAACTGAAAAAGGCAAAGTTCAAAACTCGTACacctaaaaataaatgtatacttAGTTTACAGTTTGTAAGTTGTGTTTACTCATGCACAGCTAAATACaccaataataaatatattcttCATAAATGGCAGCTGTGTTTTTGATTAATGTGCCGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005637158.1 lncRNA upstream 28830 25501529 ~ 25584577 (+) True LOC120548233
TU267083 lncRNA upstream 114127 25497004 ~ 25499280 (+) False G196696
TU267082 lncRNA upstream 114257 25496668 ~ 25499150 (+) True G196696
TU267084 lncRNA upstream 117902 25494373 ~ 25495505 (+) False LOC120548229
TU267076 lncRNA upstream 179511 25427643 ~ 25433896 (+) True G196690
TU267208 lncRNA downstream 158851 25779526 ~ 25794408 (+) True G196782
TU267222 lncRNA downstream 191540 25812215 ~ 25812441 (+) True G196788
TU267300 lncRNA downstream 284045 25904720 ~ 25907869 (+) True G196841
TU267292 lncRNA downstream 291086 25911761 ~ 25939959 (+) True G196836
TU267365 lncRNA downstream 369793 25990468 ~ 25992621 (+) True G196898
XM_039784335.1 mRNA upstream 2889 25605466 ~ 25610518 (+) True dennd10
XM_039784330.1 mRNA upstream 118064 25481831 ~ 25495343 (+) True LOC120548229
XM_039784513.1 mRNA upstream 182498 25413993 ~ 25430909 (+) False fam204a
XM_039784510.1 mRNA upstream 182498 25413994 ~ 25430909 (+) False fam204a
XM_039784512.1 mRNA upstream 182498 25413994 ~ 25430909 (+) False fam204a
XM_039784288.1 mRNA downstream 42138 25662813 ~ 25674906 (+) False zgc:110045
XM_039784286.1 mRNA downstream 42140 25662815 ~ 25674906 (+) True zgc:110045
XM_039784289.1 mRNA downstream 42141 25662816 ~ 25674906 (+) False zgc:110045
XM_039784287.1 mRNA downstream 42142 25662817 ~ 25674906 (+) False zgc:110045
XM_039783070.1 mRNA downstream 57520 25678195 ~ 25707242 (+) True vwc2
TU266801 other upstream 602646 25008512 ~ 25010761 (+) False dact2
TU266740 other upstream 1044240 24564550 ~ 24569167 (+) True G196439
XR_005637109.1 other upstream 1245808 24357926 ~ 24367599 (+) True LOC120547848
XR_005637111.1 other upstream 2007833 23562283 ~ 23605574 (+) False disc1
XR_005637123.1 other upstream 2943940 22647914 ~ 22669467 (+) False tasp1
XR_005637133.1 other downstream 196576 25817251 ~ 25824677 (+) False LOC120548053
unassigned_transcript_1122 other downstream 362070 25982745 ~ 25982838 (+) True trnai-uau_2
TU267544 other downstream 1042484 26663159 ~ 26663785 (+) True G197053
TU267563 other downstream 1105084 26725759 ~ 26735787 (+) False tmem254
XR_005637113.1 other downstream 1305743 26926418 ~ 27109140 (+) False LOC120547882

Expression Profile