RNA id: TU267292


Basic Information

Item Value
RNA id TU267292
length 1595
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G196836
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 25911761 ~ 25939959 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCGGGGGGGGGGGCAAGCCAAacaaattaagttttttttcttcttaaaaaaaaataaaaagaagctGTTCAGCCCTCCTGATGGACTACAGATTGATTTTAGGTGTCGAGACGATCACAGGTGCGTACACAAAACTGGAAATTCAAACACTTTGTGCCCTTCGAAACCGTCCAGCACTCACATTTGTTTCAACGACACCTATCTGACATCTAGGGCTTAAAACGCACCAAGAAAAGGTAAGCAGATAACTCCTCAACCTTCTTTTAATCCAAGACGTACAACGCGGCACTTTGACACTGAAGCTACACTGGACAGAAGGATTAGCGTGGCATTATTGATATGGTTCTTCTCATGTTCTAGGTACTAAATTCTTTCAAGAGCTGAACAATAACCGTAAAGACACATTTCACCACTCCCAGAAGACGCATTGATGTTCTGTTGTCCCCAAGACAATGGTCTTGCTCTTACCGGCACCTGAGAAGCACTGCTGTCACTGGGTGTCTGTAATCACCTACACACTGCAAGTCCAATACCAACCTGAAGCCCTCTCTGGGTAGTTGTGGTGGTCCAAAAGGGTCGTTCGTGGTGGTGATTTCCGTCATATCCAAGCAAACTCTCATAAAGCCTCCCTGCAACTGTATCCAAACCTATACagtgtttacaaaaaaaaaaaaaaaaaaaatccagggCTGGAGACAATTATCTGACAAGCAatagaggaaaaacaaaaaaataattattttttttaaacatttttttttcttcctttttagataaaactacaatagaatggtcaaaagACTTAAcagtgatcttttttttttttcctttttttttttttaaaaaaaaaagtttatgtaCATCAACATTTACTGTACAGGTTTCTGTtttggagaaaagaaaagaatcagCATACACCAGAAGTGTGTGTAGCAAGCGTTGATAAATGTTCTGGGctgttttttaaaacatgttagctagaaaaaaaaaagggaaaatgaaaagaagaaCAGCTCATTTTCCATCTGTactgtgtacattttttttttttttttttttacggtgaGGGAGAAGAcgagtaaaaaacaaacaaaacaacaacaaaaaaaaaacggtggCTTAAGTTCTCAGATATCTCCGTGATTGTTGCGTTACTGTAAATGCCCTCTGACTGTGAGCGGGACAGAAGGGCGCTCACAACATCTGGTTTGACCAAAATCACCTATCCACAGGCAAATCTGTAATCTCTGAAGATTTGAGGTGAGGTGTccgtcctgctgctgctgcttcacactAGACATGGACCGAGCTGAACACAATCCCTGCCCCCCTGTGTGAAGTCATCTTCTCGGTGTTTGACTGAACTGTAAAGCCCCCAactctgtgtgtatataaatcCAGTCTATAGGTATGTGTTCAAGCTATGTGGATTCTGgccttttctgtttctttcagCCTCTTGGCCTGCTCCTCCAGAGTGGGGGAGTGGGCTCTCTTGGCGGTCGCTCCGTTCAGTGGGTCAGCTCCTCGGCTCACTAATGTGGGGATGGAGCTGCCCACGGGGGGCGCCGCCGCGTGTTTGGATGCCACGTGTt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU267300 lncRNA upstream 3892 25904720 ~ 25907869 (+) True G196841
TU267222 lncRNA upstream 99320 25812215 ~ 25812441 (+) True G196788
TU267208 lncRNA upstream 117353 25779526 ~ 25794408 (+) True G196782
TU267118 lncRNA upstream 236857 25594496 ~ 25674904 (+) False zgc:110045
XR_005637158.1 lncRNA upstream 327184 25501529 ~ 25584577 (+) True LOC120548233
TU267365 lncRNA downstream 50509 25990468 ~ 25992621 (+) True G196898
XR_005637095.1 lncRNA downstream 83961 26023920 ~ 26069456 (+) True LOC120547661
TU267388 lncRNA downstream 160533 26100492 ~ 26101022 (+) True G196921
XR_005637134.1 lncRNA downstream 166574 26106533 ~ 26111175 (+) True LOC120548055
TU267403 lncRNA downstream 177142 26117101 ~ 26117640 (+) True G196935
XM_039783523.1 mRNA upstream 23687 25860831 ~ 25888074 (+) True xpo1b
XM_039783525.1 mRNA upstream 23687 25863295 ~ 25888074 (+) False xpo1b
XM_039783526.1 mRNA upstream 23687 25865049 ~ 25888074 (+) False xpo1b
XM_039783524.1 mRNA upstream 24373 25862799 ~ 25887388 (+) False xpo1b
XM_039784000.1 mRNA upstream 85332 25817251 ~ 25826429 (+) True LOC120548053
XM_039784661.1 mRNA downstream 22396 25962355 ~ 25969516 (+) True haao
XM_039783140.1 mRNA downstream 37498 25977457 ~ 25980437 (+) True hcar1-3
XM_039784292.1 mRNA downstream 474565 26414524 ~ 26476727 (+) True plekhh2
XM_039783071.1 mRNA downstream 555549 26495508 ~ 26521577 (+) True si:ch73-105b23.6
XM_039784131.1 mRNA downstream 587824 26527783 ~ 26531726 (+) True calm2a
XR_005637133.1 other upstream 87084 25817251 ~ 25824677 (+) False LOC120548053
TU267128 other upstream 291086 25613407 ~ 25620675 (+) True prdx3
TU266801 other upstream 901000 25008512 ~ 25010761 (+) False dact2
TU266740 other upstream 1342594 24564550 ~ 24569167 (+) True G196439
XR_005637109.1 other upstream 1544162 24357926 ~ 24367599 (+) True LOC120547848
unassigned_transcript_1122 other downstream 42786 25982745 ~ 25982838 (+) True trnai-uau_2
TU267544 other downstream 723200 26663159 ~ 26663785 (+) True G197053
TU267563 other downstream 785800 26725759 ~ 26735787 (+) False tmem254
XR_005637113.1 other downstream 986459 26926418 ~ 27109140 (+) False LOC120547882
XR_005637159.1 other downstream 3172729 29112688 ~ 29177494 (+) True LOC120548242

Expression Profile