RNA id: XM_039783202.1


Basic Information

Item Value
RNA id XM_039783202.1
length 955
RNA type mRNA
GC content 0.51
exon number 7
gene id stpg4
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 26535284 ~ 26548760 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAAACTAGTCGGCGAGTCTAAACTTAGCCCTCCGCTAGGCCAGCTTGTTTAAATATTGATCGATAGTGGAGTCGCTGCTATAGTAACAGTCACAGTTTTAATGGTGGTCAGGTGTCACTGGATCTCCAGTCGAGTGGATAGTGAGCGACAATGAGTACAGTGCAGGATACTGCCACATGGAAAAACAAAGCTGTTTCTAAAGTCAGTGACATGTCCAGGGGTGGTAATAAAACAGATAAGGGTGATGACAAGGTGGACTTGTGTGGACGGGGGAGCTGGTGGCTGGGAACGCTGAAAGATACACCCATCCCAGGTGTCTATCACATCCGAGACTTCCTCGAAGAGGCTGAACTGAACCCGGTGAGGAAGACCTACGGGTTCAAAggcgtcggcagaaaagcccacCCTCTGGGCGTACGTAAGGGGGATTTGCTTCTCCCCGGGGCGTATGACTACATCGACTCCATCCAGGAGGTCTTGAAGCACCAGGCGTCCTACTCTTTCAAAAACTGTCCACGGCCCGACATCGTCACCCTGGGCGTCAGGGACAAGCATATAAACACTTCACCGTGCGACTATGATGTGACAGAGAAACCGGTGGAGAAGATTCCCTGCAAGCATGTGATGTTTCGGTCGACCGTGCAGCGGATCAGCTTTCCTCCTAAAGAGGGGCCTGCTCCATGCCACTACAATCCACAGACCAGACCAGGAAAAGGCAtcacttcctgcttcaaatCCACATTGCCGCGGCTCCACTGTGTGCACTCTGTAAGTCTGAAGACCCCAGGACCAGGGGCCCACGAACCTTGCTGGAAGTTGGGCGATCGTTTGAACACAGAAGCCATAGACCCATCATTTAGCCTCTTCTTCCGCAACATTCTCTAGTGTGGACTTTAATTCCCACAATAACTCCTCTCCATCCTGtatgtaaaagtaaaattacgaatgagcaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU267508 lncRNA upstream 2050 26533032 ~ 26533234 (+) True G197027
TU267441 lncRNA upstream 223998 26291118 ~ 26311286 (+) True G196967
XR_005637135.1 lncRNA upstream 405753 26122891 ~ 26129531 (+) True LOC120548056
TU267403 lncRNA upstream 417644 26117101 ~ 26117640 (+) True G196935
XR_005637134.1 lncRNA upstream 424109 26106533 ~ 26111175 (+) True LOC120548055
TU267520 lncRNA downstream 75875 26624635 ~ 26627702 (+) True G197035
TU267521 lncRNA downstream 75875 26624635 ~ 26626781 (+) False G197035
TU267570 lncRNA downstream 191497 26740257 ~ 26746085 (+) True G197069
TU267571 lncRNA downstream 191497 26740257 ~ 26743147 (+) False G197069
TU267581 lncRNA downstream 335559 26884319 ~ 26953805 (+) False pwwp2b
XM_039784131.1 mRNA upstream 3558 26527783 ~ 26531726 (+) True calm2a
XM_039783071.1 mRNA upstream 13707 26495508 ~ 26521577 (+) True si:ch73-105b23.6
XM_039784292.1 mRNA upstream 58557 26414524 ~ 26476727 (+) True plekhh2
XM_039783140.1 mRNA upstream 554847 25977457 ~ 25980437 (+) True hcar1-3
XM_039784661.1 mRNA upstream 565768 25962355 ~ 25969516 (+) True haao
XM_039784276.1 mRNA downstream 70657 26619417 ~ 26622570 (+) True mcfd2
XM_039784275.1 mRNA downstream 70662 26619422 ~ 26622570 (+) False mcfd2
XM_039784776.1 mRNA downstream 176956 26725716 ~ 26735774 (+) True tmem254
XM_039783258.1 mRNA downstream 209573 26758333 ~ 26767338 (+) True LOC120547700
XM_039782998.1 mRNA downstream 316865 26865625 ~ 26873668 (+) False LOC120547537
unassigned_transcript_1122 other upstream 552446 25982745 ~ 25982838 (+) True trnai-uau_2
XR_005637133.1 other upstream 710607 25817251 ~ 25824677 (+) False LOC120548053
TU267128 other upstream 914609 25613407 ~ 25620675 (+) True prdx3
TU266801 other upstream 1524523 25008512 ~ 25010761 (+) False dact2
TU266740 other upstream 1966117 24564550 ~ 24569167 (+) True G196439
TU267544 other downstream 114399 26663159 ~ 26663785 (+) True G197053
TU267563 other downstream 176999 26725759 ~ 26735787 (+) False tmem254
XR_005637113.1 other downstream 377658 26926418 ~ 27109140 (+) False LOC120547882
XR_005637159.1 other downstream 2563928 29112688 ~ 29177494 (+) True LOC120548242
TU268101 other downstream 2564122 29112882 ~ 29114881 (+) False LOC120548242

Expression Profile