RNA id: TU267513


Basic Information

Item Value
RNA id TU267513
length 246
lncRNA type intronic
GC content 0.41
exon number 2
gene id G197029
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 26539844 ~ 26540135 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cagaaatggcacatcctaaggaaagctcattgtgggactggctctagtggctgtaagtctgcaccaaggctgaattttgggaaagagacttcagatacagtattaggggaccactaaggcctatataaaagagacttcagatacagtattagggaaccactaaggcctatataaaagagacttcagatacagtattagggaaccactaaggcctatataaaagagacttcagatacagtattaggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU267510 lncRNA upstream 571 26538481 ~ 26539273 (+) False stpg4
TU267508 lncRNA upstream 6610 26533032 ~ 26533234 (+) True G197027
TU267441 lncRNA upstream 228558 26291118 ~ 26311286 (+) True G196967
XR_005637135.1 lncRNA upstream 410313 26122891 ~ 26129531 (+) True LOC120548056
TU267403 lncRNA upstream 422204 26117101 ~ 26117640 (+) True G196935
TU267520 lncRNA downstream 84500 26624635 ~ 26627702 (+) True G197035
TU267521 lncRNA downstream 84500 26624635 ~ 26626781 (+) False G197035
TU267570 lncRNA downstream 200122 26740257 ~ 26746085 (+) True G197069
TU267571 lncRNA downstream 200122 26740257 ~ 26743147 (+) False G197069
TU267581 lncRNA downstream 344184 26884319 ~ 26953805 (+) False pwwp2b
XM_039784131.1 mRNA upstream 8118 26527783 ~ 26531726 (+) True calm2a
XM_039783071.1 mRNA upstream 18267 26495508 ~ 26521577 (+) True si:ch73-105b23.6
XM_039784292.1 mRNA upstream 63117 26414524 ~ 26476727 (+) True plekhh2
XM_039783140.1 mRNA upstream 559407 25977457 ~ 25980437 (+) True hcar1-3
XM_039784661.1 mRNA upstream 570328 25962355 ~ 25969516 (+) True haao
XM_039784276.1 mRNA downstream 79282 26619417 ~ 26622570 (+) True mcfd2
XM_039784275.1 mRNA downstream 79287 26619422 ~ 26622570 (+) False mcfd2
XM_039784776.1 mRNA downstream 185581 26725716 ~ 26735774 (+) True tmem254
XM_039783258.1 mRNA downstream 218198 26758333 ~ 26767338 (+) True LOC120547700
XM_039782998.1 mRNA downstream 325490 26865625 ~ 26873668 (+) False LOC120547537
unassigned_transcript_1122 other upstream 557006 25982745 ~ 25982838 (+) True trnai-uau_2
XR_005637133.1 other upstream 715167 25817251 ~ 25824677 (+) False LOC120548053
TU267128 other upstream 919169 25613407 ~ 25620675 (+) True prdx3
TU266801 other upstream 1529083 25008512 ~ 25010761 (+) False dact2
TU266740 other upstream 1970677 24564550 ~ 24569167 (+) True G196439
TU267544 other downstream 123024 26663159 ~ 26663785 (+) True G197053
TU267563 other downstream 185624 26725759 ~ 26735787 (+) False tmem254
XR_005637113.1 other downstream 386283 26926418 ~ 27109140 (+) False LOC120547882
XR_005637159.1 other downstream 2572553 29112688 ~ 29177494 (+) True LOC120548242
TU268101 other downstream 2572747 29112882 ~ 29114881 (+) False LOC120548242

Expression Profile