RNA id: TU267520


Basic Information

Item Value
RNA id TU267520
length 3068
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G197035
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 26624635 ~ 26627702 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGCATTCATGAAATCGCGTGTAAAAGACATTGGGAAAAGTATTTTAAATCTTTATTTGTTAGGTGTACTCCACAAGGTTTTTAGACATCCCGTTTCATGTAAAGAACTAAACATGGCTCAAGAGATTGTGTAGCTTGACATTGGCCCTACCATGTGTAGGTGGTTCACAGTTCAACACATGGAGCAGAGAACAAAACATGTTGACTTTTGATTTAAATTGCAGTGAAGAAAACGTGTAATAAGTAGGTCCGCTGACATGTAAGACTCACCCACAGTACTTactattaaagctatagtgtgtagtttctgtcgcccccgtgaggaattctaagtaatgacaacaaaactgtcgggcgcgtccacatgatataagccttccgtgatcgcgcacgcgcccccacccctcctccacacagctgctagtagccaaggaggacacggaggattaaaaaatacATGATGGACTCCtctcattatcttcactcgaggttctgcgcgcgaaagtcaccggacgactcaatcatagccatactgagaaatccagagagagttgtgtggagctgatagtcttaattagctttgtagcaactcatttggcaatggacGCTCATTAATACCAAaatgttacgcactaaagctttaatactAGCAGTGGATGTTGAGGAGAACCATATTGAAAGCAGTTTAAAGTATAATACATGTGTATAGGGTCTCTCCGATTTTGAGCTTGTGAAATGATTTTTCAGCAATAATTTATACACCTGTGAAAAACGGAATATTTGAATACAGATTGAAAACTGTGTGGGGAAACTCCCACACTGTGTATGACACTGAAGTTACTTTTACAGTCAAAATCAGGGCCAGAATTTGTACTTGGGACTTaaatgtgtgtctgcgtgtttaATCGCAGTGTGGTAACTTTGAGTGCTGACTTTGATTGCTGACAGTGAGACAGATGCAGTTGTTATGCTTTAAATCTGTACTCCGATATTCACAAAAGCACATCTTCACAGTCTGTGACGCCTCACCGCCAGGgttcaaaatgaactttttcATCCACCAGCCCAGCACTCAATatattaccattgtttttttgggctGGTGAGGGAAGCAAAACTACCAGCAACGTGCATATTTTACctgcatttggctggtggatggtgctaattttgaaccctgatcAGCAGTGATATCATTTGTGCACGCATTTGATTATAATTGTTTTCTATGCATTCACAAACTTGAATTTATTTGTGAGTTGTTACTACTTGCATAAGCTGATATGCAACCAGAGGCTGTGCGTTTGGAACTTCAGACTGTTTCTAGAAATGAAATGAGTTAACACTTTACTTAAAGAGCCCCTATCATGCTCTTTTGATTTGTCCTGTCTTTTAGTGTATTATatagttttttgtgtatgtaatagatgtataaggtacaaaaaaaactaatttcacTCTGaatggagctttctctcccacagacagcaTTTTTTTCTCGAATACATAAAAACACCTCGCCCATGTTGCTGTTTGAAATTCCACAATTtgtgatgtcactgattgagaATGCCAGCCTAGTTTATCATATGTGCTGCCCATAGGTGCTGCCTGAACGAGCACAGCCCCGAccagtggcttgtttgaatttggttgacctgtcacaacagagtgggccagctgaccaatcagagcagactgggcttctCGGCAGGATCGGGACACAGAAACGGAGCGTTTCAGGCAAAGGAACTGCAGCAATGAGAAACATAATATGAtgtttgaacatcaaagcatgtcaacctattctagtagaccccaatagtacaaatatgatgctgaaaaggagtataataggggctctttaaaatGAGTGagaatatgtgtgtgaatgtgaaacAAGGTGAAAAAGGACAGTGCATCATCACCTAATCCTCTGCAGCTAAATATAGATTaaaaatcattttaatgttatatttgactttttttttaaattggccTCTGTTACTTCTTAGCTCCAGTGTGAGGCTTGGTCTAGAGGCTGCATGGAGGCCAGAGAGAACATGGGCGAGGTGAGGTTGCTCCTCAGCGGGCTGTACCAGTCTTCATGCTGCCGCTGGGAGGCCGGCTGCGGTGGGACGCTGGGGCAGGGGCACTGGCCCACCGGGCCTGGGTGCCGGGAGTACGCCCCAGAGGGCAGCATGGGGGGGAGGCGGGGGATGTGAGCCAGGGGCTGGGTGTAGTACTGTCGAGCCATGCCGGACGGCTGAACGTGCATGCCTCCCAGCAGCGCCCTGTGGCCTGACATCACGCCCACTGGGAGAACTTTCTGGGAGGCCCGCTCCTGCTTCCGCTGTTTGGCTCTTCTGTTCTGAAACCAAACCTGCCGAGACAAGGACAGATTAGCTGGCCTGCACACCTCGATGCAAGTAAGACACCTGGCATTATAATGCTGTTCAAAAAGGGTGGGTTCAGCAAAAATGGGACATTTAAGCATCGCCTTGTGTTGCCATTGAAGCAAAACAACACTACTGATACTTCTACTACTGACACTACCACACCTGGTGTGTTCAGGGAAGGTGCACCCCCCAATGAATTTAACCccaaaaaagtgtttaaaagaaatataaattgTCCAAATATTGCAGACGTTTTAATAAAGCCATGTTGTCTCTgctcacatttcaaaataaaatgcacaatattatatttattttttcttaagCACTGTCCAACCACATGTTAGCAAAACTGAGACAGTGCTTTTAAGTAAGGTGGCGCACTTTATAATCATGTTTCTCACAGCATTTCTGCAATATTATACATTCAATTCAGTTATGGAGAACAGTGATAAGGTCATAGACAATATTGTAATTAAAGTGCAAAGTCAGGGTATTCAATTTGCAATGACAAAGCCAGTAAatgttcacatttgagaagctggagcagTGAGTGGTTCGATATGTTTGCTTGATAAAAGGGCagcccccctcactctgacatctctccatatatatataataataaatccacTCTTCAGTTGTACTTTTTCTAAATGtaataaagaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU267513 lncRNA upstream 84500 26539844 ~ 26540135 (+) True G197029
TU267510 lncRNA upstream 85362 26538481 ~ 26539273 (+) False stpg4
TU267508 lncRNA upstream 91401 26533032 ~ 26533234 (+) True G197027
TU267441 lncRNA upstream 313349 26291118 ~ 26311286 (+) True G196967
XR_005637135.1 lncRNA upstream 495104 26122891 ~ 26129531 (+) True LOC120548056
TU267570 lncRNA downstream 112555 26740257 ~ 26746085 (+) True G197069
TU267571 lncRNA downstream 112555 26740257 ~ 26743147 (+) False G197069
TU267581 lncRNA downstream 256617 26884319 ~ 26953805 (+) False pwwp2b
TU267596 lncRNA downstream 437024 27064726 ~ 27104508 (+) True G197084
TU267599 lncRNA downstream 488264 27115966 ~ 27116514 (+) True G197087
XM_039784276.1 mRNA upstream 2065 26619417 ~ 26622570 (+) True mcfd2
XM_039784275.1 mRNA upstream 2065 26619422 ~ 26622570 (+) False mcfd2
XM_039783202.1 mRNA upstream 75875 26535284 ~ 26548760 (+) True stpg4
XM_039784131.1 mRNA upstream 92909 26527783 ~ 26531726 (+) True calm2a
XM_039783071.1 mRNA upstream 103058 26495508 ~ 26521577 (+) True si:ch73-105b23.6
XM_039784776.1 mRNA downstream 98014 26725716 ~ 26735774 (+) True tmem254
XM_039783258.1 mRNA downstream 130631 26758333 ~ 26767338 (+) True LOC120547700
XM_039782998.1 mRNA downstream 237923 26865625 ~ 26873668 (+) False LOC120547537
XM_039783000.1 mRNA downstream 238106 26865808 ~ 26873668 (+) False LOC120547537
XM_039782999.1 mRNA downstream 238337 26866039 ~ 26873668 (+) False LOC120547537
unassigned_transcript_1122 other upstream 641797 25982745 ~ 25982838 (+) True trnai-uau_2
XR_005637133.1 other upstream 799958 25817251 ~ 25824677 (+) False LOC120548053
TU267128 other upstream 1003960 25613407 ~ 25620675 (+) True prdx3
TU266801 other upstream 1613874 25008512 ~ 25010761 (+) False dact2
TU266740 other upstream 2055468 24564550 ~ 24569167 (+) True G196439
TU267544 other downstream 35457 26663159 ~ 26663785 (+) True G197053
TU267563 other downstream 98057 26725759 ~ 26735787 (+) False tmem254
XR_005637113.1 other downstream 298716 26926418 ~ 27109140 (+) False LOC120547882
XR_005637159.1 other downstream 2484986 29112688 ~ 29177494 (+) True LOC120548242
TU268101 other downstream 2485180 29112882 ~ 29114881 (+) False LOC120548242

Expression Profile